R OBO Parser v.0.0.1

R OBO is a simple, naive parser for term attributes in OBO v.1.2 ontology files such as found on Bioportal.

OBO is text file used by OBO-edit for viewing and editing ontologies. See here for definition.

Getting Started

Source and use the readOboFile function. The function has two arguments, the first is the a character vector from readLines() of an .obo file. Second is a character list of term attributes to read. At the moment roboparse only takes in the last value if multiple attributes with identical names exist within each Term.

Prerequisites

roboparse requires the following:

R v.3.3.3 or above

Contributing

Please contact us if you wish to contribute, and submit pull requests to us.

Versioning

We use SemVer for versioning.

Authors

• Edward Lau, PhD - Code - ed-lau
• Maggie Lam, PhD - Code - Maggie-Lam

Molecular Proteomics Laboratory

See also the list of contributors who participated in this project.

License

This project is licensed under the MIT License - see the LICENSE.md file for details

Acknowledgments

• PurpleBooth for Github Readme template.