From 8339639c05c9a464d6128bf44651b2335045c96c Mon Sep 17 00:00:00 2001 From: matuskalas Date: Tue, 1 Nov 2016 03:48:18 +0100 Subject: [PATCH] History of releases: 1.11 --- releases/EDAM.owl | 1317 ++++++++++++++++++++++++++++++++++++++++------------- 1 file changed, 1009 insertions(+), 308 deletions(-) diff --git a/releases/EDAM.owl b/releases/EDAM.owl index 92f1e96..145874d 100644 --- a/releases/EDAM.owl +++ b/releases/EDAM.owl @@ -30,29 +30,29 @@ EDAM_topic http://edamontology.org/topic_ "EDAM topics" EDAM_operation http://edamontology.org/operation_ "EDAM operations" + 09:07:2015 + 3625 formats "EDAM data formats" EDAM + An ontology of bioinformatics topics, operations, types of data including identifiers, and data formats identifiers "EDAM types of identifiers" data "EDAM types of data" relations "EDAM relations" edam "EDAM" EDAM editors: Jon Ison, Matus Kalas, and Herve Menager. Contributors: Inge Jonassen, Dan Bolser, Hamish McWilliam, Mahmut Uludag, James Malone, Rodrigo Lopez, Steve Pettifer, and Peter Rice. Contibutions from these projects: EMBRACE, ELIXIR, and BioMedBridges (EU); EMBOSS (BBSRC, UK); eSysbio, FUGE Bioinformatics Platform, and ELIXIR.NO/Norwegian Bioinformatics Platform (Research Council of Norway). See http://edamontology.org for documentation and licence. operations "EDAM operations" - 01:07:2015 EDAM http://edamontology.org/ "EDAM relations and concept properties" application/rdf+xml EDAM_data http://edamontology.org/data_ "EDAM types of data" - 3581 concept_properties "EDAM concept properties" Jon Ison - 1.10 Matúš Kalaš - Jon Ison, Matus Kalas, Herve Menager + Jon Ison, Matus Kalas, Hervé Ménager EDAM_format http://edamontology.org/format_ "EDAM data formats" topics "EDAM topics" + 1.11 Hervé Ménager EDAM is an ontology of well established, familiar concepts that are prevalent within bioinformatics, including types of data and data identifiers, data formats, operations and topics. EDAM is a simple ontology - essentially a set of terms with synonyms and definitions - organised into an intuitive hierarchy for convenient use by curators, software developers and end-users. EDAM is suitable for large-scale semantic annotations and categorization of diverse bioinformatics resources. EDAM is also suitable for diverse application including for example within workbenches and workflow-management systems, software distributions, and resource registries. - EDAM: An ontology of bioinformatics operations, types of data and identifiers, data formats, and topics @@ -362,8 +362,8 @@ - In very unusual cases. true + In very unusual cases. @@ -415,8 +415,8 @@ - 'OBO_REL:has_participant' is narrower in the sense that it only relates ontological categories (concepts) that are a 'process' (span:Process) with ontological categories that are a 'continuant' (snap:Continuant), and broader in the sense that it relates with any participating objects not just inputs or input arguments of the subject. OBO_REL:has_participant + 'OBO_REL:has_participant' is narrower in the sense that it only relates ontological categories (concepts) that are a 'process' (span:Process) with ontological categories that are a 'continuant' (snap:Continuant), and broader in the sense that it relates with any participating objects not just inputs or input arguments of the subject. @@ -455,8 +455,8 @@ - true In very unusual cases. + true @@ -491,8 +491,8 @@ - true In very unusual cases. + true @@ -548,23 +548,23 @@ - Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:function_of' only relates subjects that are a 'function' (snap:Function) with objects that are an 'independent_continuant' (snap:IndependentContinuant), so for example no processes. It does not define explicitly that the subject is a function of the object. - OBO_REL:function_of - - - - - Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:inheres_in' is narrower in the sense that it only relates ontological categories (concepts) that are a 'specifically_dependent_continuant' (snap:SpecificallyDependentContinuant) with ontological categories that are an 'independent_continuant' (snap:IndependentContinuant), and broader in the sense that it relates any borne subjects not just functions. OBO_REL:inheres_in + Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:inheres_in' is narrower in the sense that it only relates ontological categories (concepts) that are a 'specifically_dependent_continuant' (snap:SpecificallyDependentContinuant) with ontological categories that are an 'independent_continuant' (snap:IndependentContinuant), and broader in the sense that it relates any borne subjects not just functions. - In very unusual cases. true + In very unusual cases. + + OBO_REL:function_of + Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:function_of' only relates subjects that are a 'function' (snap:Function) with objects that are an 'independent_continuant' (snap:IndependentContinuant), so for example no processes. It does not define explicitly that the subject is a function of the object. + + + @@ -615,8 +615,8 @@ - true In very unusual cases. + true @@ -650,8 +650,8 @@ - 'OBO_REL:participates_in' is narrower in the sense that it only relates ontological categories (concepts) that are a 'continuant' (snap:Continuant) with ontological categories that are a 'process' (span:Process), and broader in the sense that it relates any participating subjects not just outputs or output arguments. It is also not clear whether an output (result) actually participates in the process that generates it. OBO_REL:participates_in + 'OBO_REL:participates_in' is narrower in the sense that it only relates ontological categories (concepts) that are a 'continuant' (snap:Continuant) with ontological categories that are a 'process' (span:Process), and broader in the sense that it relates any participating subjects not just outputs or output arguments. It is also not clear whether an output (result) actually participates in the process that generates it. @@ -685,17 +685,17 @@ - true - In very unusual cases. - - - - OBO_REL:quality_of Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:quality_of' might be seen narrower in the sense that it only relates subjects that are a 'quality' (snap:Quality) with objects that are an 'independent_continuant' (snap:IndependentContinuant), and is broader in the sense that it relates any qualities of the object. + + In very unusual cases. + true + + + @@ -708,6 +708,7 @@ --> + @@ -749,22 +750,22 @@ - EDAM does not distinguish the multiplicity of data, such as one data item (datum) versus a collection of data (data set). Data set + EDAM does not distinguish the multiplicity of data, such as one data item (datum) versus a collection of data (data set). - Data record - EDAM does not distinguish a data record (a tool-understandable information artefact) from data or datum (its content, the tool-understandable encoding of an information). + Datum + EDAM does not distinguish the multiplicity of data, such as one data item (datum) versus a collection of data (data set). - + - EDAM does not distinguish the multiplicity of data, such as one data item (datum) versus a collection of data (data set). - Datum + Data record + EDAM does not distinguish a data record (a tool-understandable information artefact) from data or datum (its content, the tool-understandable encoding of an information). - + @@ -2135,8 +2136,8 @@ - Perhaps surprisingly, the definition of 'SO:assembly' is narrower than the 'SO:sequence_assembly'. SO:0001248 + Perhaps surprisingly, the definition of 'SO:assembly' is narrower than the 'SO:sequence_assembly'. @@ -4492,13 +4493,13 @@ - + - + Unique name of a codon usage table. @@ -9064,13 +9065,13 @@ - + - + beta12orEarlier @@ -18354,13 +18355,13 @@ - + - + beta12orEarlier @@ -20413,13 +20414,13 @@ - + - + Identifier of a lipid. @@ -27970,7 +27971,7 @@ - + beta12orEarlier @@ -28274,13 +28275,13 @@ - + - + Data format for the emission and transition counts of a hidden Markov model. @@ -29091,19 +29092,19 @@ - + - + - + BioXSD XML format @@ -31357,6 +31358,706 @@ + + + + arff + + ARFF (Attribute-Relation File Format) is an ASCII text file format that describes a list of instances sharing a set of attributes. + 1.11 + This file format is for machine learning. + + + + + + + + + + + + afg + + + 1.11 + AFG is a single text-based file assembly format that holds read and consensus information together + + + + + + + + + + + + bedgraph + + + Holds a tab-delimited chromosome /start /end / datavalue dataset. + 1.11 + The bedGraph format allows display of continuous-valued data in track format. This display type is useful for probability scores and transcriptome data + + + + + + + + + + + + bedstrict + + Browser Extensible Data (BED) format of sequence annotation track that strictly does not contain non-standard fields beyond the first 3 columns. + Galaxy allows BED files to contain non-standard fields beyond the first 3 columns, some other implementations do not. + 1.11 + + + + + + + + + + + + bed6 + + Tab delimited data in strict BED format - no non-standard columns allowed; column count forced to 6 + BED file format where each feature is described by chromosome, start, end, name, score, and strand. + 1.11 + + + + + + + + + + + + bed12 + + 1.11 + Tab delimited data in strict BED format - no non-standard columns allowed; column count forced to 12 + A BED file where each feature is described by all twelve columns. + + + + + + + + + + + + chrominfo + + + 1.11 + Tabular format of chromosome names and sizes used by Galaxy. + Galaxy allows BED files to contain non-standard fields beyond the first 3 columns, some other implementations do not. + + + + + + + + + + + + customtrack + + + 1.11 + Custom Sequence annotation track format used by Galaxy. + Used for tracks/track views within galaxy. + + + + + + + + + + + + csfasta + + + Color space FASTA format sequence variant. + 1.3 + FASTA format extended for color space information. + + + + + + + + + + + + hdf5 + + An HDF5 file appears to the user as a directed graph. The nodes of this graph are the higher-level HDF5 objects that are exposed by the HDF5 APIs: Groups, Datasets, Named datatypes. H5py uses straightforward NumPy and Python metaphors, like dictionary and NumPy array syntax. + 1.11 + h5 + Binary format used by Galaxy for hierarchical data. + + + + + + + + + + + + tiff + + + The TIFF format is perhaps the most versatile and diverse bitmap format in existence. Its extensible nature and support for numerous data compression schemes allow developers to customize the TIFF format to fit any peculiar data storage needs. + + A versatile bitmap format. + 1.11 + + + + + + + + + + + bmp + + + Standard bitmap storage format in the Microsoft Windows environment. + 1.11 + Although it is based on Windows internal bitmap data structures, it is supported by many non-Windows and non-PC applications. + + + + + + + + + + + im + + + IM is a format used by LabEye and other applications based on the IFUNC image processing library. + IFUNC library reads and writes most uncompressed interchange versions of this format. + + 1.11 + + + + + + + + + + + pcd + + + PCD was developed by Kodak. A PCD file contains five different resolution (ranging from low to high) of a slide or film negative. Due to it PCD is often used by many photographers and graphics professionals for high-end printed applications. + 1.11 + Photo CD format, which is the highest resolution format for images on a CD. + + + + + + + + + + + pcx + + + 1.11 + PCX is an image file format that uses a simple form of run-length encoding. It is lossless. + + + + + + + + + + + + ppm + + + The PPM format is a lowest common denominator color image file format. + + 1.11 + + + + + + + + + + + psd + + + 1.11 + PSD (Photoshop Document) is a proprietary file that allows the user to work with the images’ individual layers even after the file has been saved. + + + + + + + + + + + xbm + + + The XBM format was replaced by XPM for X11 in 1989. + 1.11 + X BitMap is a plain text binary image format used by the X Window System used for storing cursor and icon bitmaps used in the X GUI. + + + + + + + + + + + xpm + + + 1.11 + Sequence of segments with markers. Begins with byte of 0xFF and follows by marker type. + X PixMap (XPM) is an image file format used by the X Window System, it is intended primarily for creating icon pixmaps, and supports transparent pixels. + + + + + + + + + + + + rgb + + + 1.11 + RGB file format is the native raster graphics file format for Silicon Graphics workstations. + + + + + + + + + + + + pbm + + + 1.11 + The PBM format is a lowest common denominator monochrome file format. It serves as the common language of a large family of bitmap image conversion filters. + + + + + + + + + + + + pgm + + + It is designed to be extremely easy to learn and write programs for. + The PGM format is a lowest common denominator grayscale file format. + + 1.11 + + + + + + + + + + + png + + + 1.11 + PNG is a file format for image compression. + + It iis expected to replace the Graphics Interchange Format (GIF). + + + + + + + + + + + svg + + + The SVG specification is an open standard developed by the World Wide Web Consortium (W3C) since 1999. + Scalable Vector Graphics (SVG) is an XML-based vector image format for two-dimensional graphics with support for interactivity and animation. + 1.11 + + + + + + + + + + + rast + + + Sun Raster is a raster graphics file format used on SunOS by Sun Microsystems + 1.11 + The SVG specification is an open standard developed by the World Wide Web Consortium (W3C) since 1999. + + + + + + + + + + + Sequence quality report format (text) + + + + + + + + + Textual report format for sequence quality for reports from sequencing machines. + 1.11 + + + + + + + + + + qual + + + http://en.wikipedia.org/wiki/Phred_quality_score + 1.11 + Phred quality scores are defined as a property which is logarithmically related to the base-calling error probabilities. + FASTQ format subset for Phred sequencing quality score data only (no sequences). + + + + + + + + + + qualsolexa + + + Solexa/Illumina 1.0 format can encode a Solexa/Illumina quality score from -5 to 62 using ASCII 59 to 126 (although in raw read data Solexa scores from -5 to 40 only are expected) + 1.11 + FASTQ format subset for Phred sequencing quality score data only (no sequences) for Solexa/Illumina 1.0 format. + + + + + + + + + + qualillumina + + + Starting in Illumina 1.5 and before Illumina 1.8, the Phred scores 0 to 2 have a slightly different meaning. The values 0 and 1 are no longer used and the value 2, encoded by ASCII 66 "B", is used also at the end of reads as a Read Segment Quality Control Indicator. + FASTQ format subset for Phred sequencing quality score data only (no sequences) from Illumina 1.5 and before Illumina 1.8. + 1.11 + http://en.wikipedia.org/wiki/Phred_quality_score + + + + + + + + + + qualsolid + + For SOLiD data, the sequence is in color space, except the first position. The quality values are those of the Sanger format. + FASTQ format subset for Phred sequencing quality score data only (no sequences) for SOLiD data. + 1.11 + http://en.wikipedia.org/wiki/Phred_quality_score + + + + + + + + + + qual454 + + http://en.wikipedia.org/wiki/Phred_quality_score + 1.11 + FASTQ format subset for Phred sequencing quality score data only (no sequences) from 454 sequencers. + + + + + + + + + + ENCODE peak format + + 1.11 + Human ENCODE peak format. + Format that covers both the broad peak format and narrow peak format from ENCODE. + + + + + + + + + + + + ENCODE narrow peak format + + 1.11 + Human ENCODE narrow peak format. + Format that covers both the broad peak format and narrow peak format from ENCODE. + + + + + + + + + + + + ENCODE broad peak format + + 1.11 + Human ENCODE broad peak format. + + + + + + + + + + + + bgzip + + + BAM files are compressed using a variant of GZIP (GNU ZIP), into a format called BGZF (Blocked GNU Zip Format). + Blocked GNU Zip format. + 1.11 + + + + + + + + + + + tabix + + + TAB-delimited genome position file index format. + 1.11 + + + + + + + + + + + + Graph format + + Data format for graph data. + 1.11 + + + + + + + + + + xgmml + + XML-based format used to store graph descriptions within Galaxy. + 1.11 + + + + + + + + + + + sif + + 1.11 + SIF (simple interaction file) Format - a network/pathway format used for instance in cytoscape. + + + + + + + + + + + xlsx + + + 1.11 + MS Excel spreadsheet format consisting of a set of XML documents stored in a ZIP-compressed file. + + + + + + + + + + SQLite + + https://www.sqlite.org/fileformat2.html + Data format used by the SQLite database. + 1.11 + + + + + + + + + + GeminiSQLite + + https://gemini.readthedocs.org/en/latest/content/quick_start.html + 1.11 + Data format used by the SQLite database conformant to the Gemini schema. + + + + + + + + + + Index format + + + + + + + + + Format of a data index of some type. + 1.11 + + + + + + + + + + snpeffdb + + An index of a genome database, indexed for use by the snpeff tool. + 1.11 + + + + + + @@ -31399,22 +32100,22 @@ - Operation is a function that is computational. It typically has input(s) and output(s), which are always data. - Function + Process + Process can have a function (as its quality/attribute), and can also perform an operation with inputs and outputs. - + - Computational tool Computational tool provides one or more operations. + Computational tool - Process - Process can have a function (as its quality/attribute), and can also perform an operation with inputs and outputs. + Function + Operation is a function that is computational. It typically has input(s) and output(s), which are always data. - + @@ -31426,14 +32127,14 @@ - - + + - - + + beta12orEarlier @@ -31470,14 +32171,14 @@ - - + + - - + + Annotate an entity (typically a biological or biomedical database entity) with terms from a controlled vocabulary. @@ -31655,14 +32356,14 @@ - - + + - - + + beta12orEarlier @@ -31727,14 +32428,14 @@ - - + + - - + + beta12orEarlier @@ -31915,14 +32616,14 @@ - - + + - - + + WHATIF: SymShellTenXML @@ -31997,14 +32698,14 @@ - - + + - - + + beta12orEarlier @@ -32085,7 +32786,7 @@ - + @@ -32097,7 +32798,7 @@ - + beta12orEarlier @@ -32348,14 +33049,14 @@ - - + + - - + + Predict tertiary structure of a molecular (biopolymer) sequence. @@ -32490,14 +33191,14 @@ - - + + - - + + Predict RNA secondary structure (for example knots, pseudoknots, alternative structures etc). @@ -32518,14 +33219,14 @@ - - + + - - + + beta12orEarlier @@ -32604,14 +33305,14 @@ - - + + - - + + beta12orEarlier @@ -32665,32 +33366,32 @@ - - + + - + - - + + - + - - + + beta12orEarlier @@ -32911,20 +33612,20 @@ - - + + - - + + - - + + Sequence profile construction @@ -32944,20 +33645,20 @@ - - + + - + - - + + Structural profile generation @@ -32977,8 +33678,8 @@ - - + + @@ -32989,8 +33690,8 @@ - - + + Sequence profile alignment @@ -33045,20 +33746,20 @@ - - + + - - + + - - + + Sequence-profile alignment construction @@ -33185,14 +33886,14 @@ - - + + - - + + beta12orEarlier @@ -33216,14 +33917,14 @@ - - + + - - + + Text data mining @@ -33267,14 +33968,14 @@ - - + + - - + + PCR primer prediction @@ -33296,13 +33997,13 @@ - + - - + + @@ -33313,8 +34014,8 @@ - - + + Predict and/or optimize oligonucleotide probes for DNA microarrays, for example for transcription profiling of genes, or for genomes and gene families. @@ -33334,14 +34035,14 @@ - - + + - - + + beta12orEarlier @@ -33361,13 +34062,13 @@ - + - + @@ -33514,13 +34215,13 @@ - + - + beta12orEarlier @@ -33539,14 +34240,14 @@ - - + + - - + + beta12orEarlier @@ -33565,20 +34266,20 @@ - - + + - - + + - + Evaluate the quality or correctness a protein three-dimensional model. @@ -33645,14 +34346,14 @@ - - + + - - + + beta12orEarlier @@ -33686,13 +34387,13 @@ - + - + @@ -33780,13 +34481,13 @@ - + - + Methods might predict silent or pathological mutations. @@ -33846,14 +34547,14 @@ - - + + - - + + beta12orEarlier @@ -33904,20 +34605,20 @@ - - + + - + - - + + beta12orEarlier @@ -34317,13 +35018,13 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - + - + @@ -34402,14 +35103,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + beta12orEarlier @@ -34591,14 +35292,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + beta12orEarlier @@ -34830,14 +35531,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + beta12orEarlier @@ -34899,14 +35600,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + Calculate pH-dependent properties from pKa calculations of a protein sequence. @@ -35163,14 +35864,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + Sequence feature detection (nucleic acid) @@ -35401,14 +36102,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + beta12orEarlier @@ -35742,8 +36443,8 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern Sequence alignment analysis (site correlation) - + Analyse correlations between sites in a molecular sequence alignment. This is typically done to identify possible covarying positions and predict contacts or structural constraints in protein structures. beta12orEarlier @@ -36111,14 +36812,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + beta12orEarlier @@ -36205,20 +36906,20 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + - + Model the structure of a protein in complex with a small molecule or another macromolecule. @@ -36308,14 +37009,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + Nucleic acid folding family identification @@ -36692,14 +37393,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + RNA secondary structure alignment generation @@ -37376,14 +38077,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + Phylogenetic tree construction (from gene frequencies) @@ -37666,7 +38367,7 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - + @@ -37678,7 +38379,7 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - + beta12orEarlier @@ -37723,13 +38424,13 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - + - + @@ -37749,13 +38450,13 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - + - + @@ -37775,13 +38476,13 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - + - + @@ -37801,14 +38502,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + beta12orEarlier @@ -37828,14 +38529,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + Sequence alignment rendering @@ -37854,14 +38555,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + Sequence cluster rendering @@ -37943,14 +38644,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + Structure rendering @@ -39328,14 +40029,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + This is a broad concept and is used a placeholder for other, more specific concepts. @@ -39673,14 +40374,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + Predict a network of gene regulation. @@ -39885,14 +40586,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + @@ -39946,14 +40647,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + Gene and gene component prediction @@ -40085,14 +40786,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + Identify or predict protein-protein interactions, interfaces, binding sites etc. @@ -40314,14 +41015,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + Analyse a nucleic acid sequence (using methods that are only applicable to nucleic acid sequences). @@ -40381,14 +41082,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + Analyse nucleic acid tertiary structural data. @@ -41026,14 +41727,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + beta12orEarlier @@ -41067,14 +41768,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + beta12orEarlier @@ -41366,14 +42067,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + beta12orEarlier @@ -41421,14 +42122,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + @@ -41866,14 +42567,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + beta13 @@ -41919,20 +42620,20 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + - - + + 1.1 @@ -42985,14 +43686,14 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - - + + - - + + Recognition of which format the given data is in. @@ -43445,8 +44146,8 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern Gene expression correlation analysis - + 1.7 Gene co-expression network analysis Analyse the correlation patterns among genes across across a variety of experiments, microarray samples etc. @@ -43468,8 +44169,8 @@ sequences matching a given sequence motif or pattern, such as a Prosite pattern - Identify a correlation, i.e. a statistical relationship between two random variables or two sets of data. 1.7 + Identify a correlation, i.e. a statistical relationship between two random variables or two sets of data.