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Pinned

  1. tools for working with genome variation graphs

    C++ 574 120

  2. Dockerfiles and WDL descriptions for various tools on Broad FireCloud

    wdl

  3. Classify sequencing reads using MinHash.

    C++ 29 3

  4. A C++ library and utilities for manipulating the Graphical Fragment Assembly format.

    C++ 24 14

  5. Linear-time, low-memory construction of variation graphs

    C++ 14

  6. A public version of my PhD thesis

1,092 contributions in the last year

Oct Nov Dec Jan Feb Mar Apr May Jun Jul Aug Sep Oct Mon Wed Fri
Activity overview
Contributed to edawson/svaha2, NCBI-Codeathons/super-minityper, edawson/dawdl and 5 other repositories
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Contribution activity

October 2019

Created a pull request in NCBI-Codeathons/super-minityper that received 1 comment

Analysis

+48 −0 1 comment

Created an issue in NCBI-Codeathons/super-minityper that received 3 comments

PAF/GAF-based SV typing script

We need a downstream python analysis script that does the following: Given a GFA and PAF, try to answer the following questions: Does a given PAF …

3 comments
1 contribution in private repositories Oct 14

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