Version 0.0.15 broke BiocNeighbors

[lcolladotor]

Hi,

I'm unfamiliar with RcppAnnoy but I just ran into an issue where the changes from 0.0.14 to 0.0.15 broke the reverse dependency BiocNeighbors as I described in detailed to @LTLA
at LTLA/BiocNeighbors#10. I'm letting you know as it could involve a fix either on the BiocNeighbors side or the RcppAnnoy one (I just don't know).

I noticed this while trying to update https://jhubiostatistics.shinyapps.io/spatialLIBD/.

Best,
Leo

[eddelbuettel]

Thanks for the heads, I am sure @LTLA and I should be able to sort it out.

[eddelbuettel]

(This is now taken care of in master thanks to very nice flurry of activity by @erikbern @jlmelville @LTLA and myself. We should have 0.0.16 on CRAN by end of week; I will close it then. If anybody needs a tarball of 0.0.15.2 in a drat-able repo let me know, else just fetch master.)

[lcolladotor]

Awesome, thanks for all the work and the updates! I'll keep an eye for 0.0.16 as that's what's stopping Bioconductor/Contributions#1389 (comment) (I don't think that I can use another RcppAnnoy version in Bioconductor's Single Package Builder infrastructure besides the latest from CRAN).

Best,
Leo

[eddelbuettel]

If you need a new version NOW (ie today) I can roll one up into a drat you can call via Suggests: and Additional_Repositiries.

Otherwise by end of week / weekend / Monday at the latest a new 0.0.16 will on CRAN, and it will be awesome.

[LTLA]

@lcolladotor I don't understand. BiocNeighbors is all green on BioC-release and Bioc-devel.

[lcolladotor]

Ohh, ok! Thanks to the both of you!

I dropped all the code related to RcppAnnoy's versions at LieberInstitute/spatialLIBD@5024450 and it all works again (both on Travis and BioC's SBP). I didn't realize earlier that I didn't need to wait for 0.0.16. Thanks!!

• Travis: https://travis-ci.com/LieberInstitute/spatialLIBD/builds/151599703?utm_source=slack&utm_medium=notification
• Bioc: http://bioconductor.org/spb_reports/spatialLIBD_buildreport_20200303135350.html (shows other warnings, nothing to do with RcppAnnoy)

Best,
Leo

[eddelbuettel]

This is also fixed in 0.0.16 now on CRAN.