No description, website, or topics provided.
Switch branches/tags
Nothing to show
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
bosco
client_scripts
cloud_copasi
html5up
.DS_Store
.gitignore
LICENSE.txt
README.txt
manage.py
readme.md

readme.md

Introduction

Cloud-COPASI is a web-based tool for running computationally intensive simulation and analysis tasks in parallel on a high-throughput computing pool. Cloud-COPASI can connect to existing computing pools, or provides a simple interface for launching a new computing pool using the Amazon Elastic Compute Cloud (EC2).

Cloud-COPASI can run a number of simulation and analysis tasks, including global sensitivity analyses, stochastic simulations, parameter scans, optimizations, and parameter fitting. Each task is automatically slit into a number of smaller jobs, which are executed in parallel, allowing for significant speed-ups in running time.

Models must be prepared using COPASI (COmplex PAthway SImulator), a widely used free, open-source, cross-platform simulation tool.

Usage

We host an implementation of Cloud-COPASI, which is available for use free of charge, at cloud.copasi.org. For new users this is the recommended option.

Deployment

For users wishing to deploy their own implementation of Cloud-COPASI, please see the Deployment Guide. This option is recommended for advanced users only.

About

Cloud-COPASI is developed by Edward Kent in the Computational Systems Biology and Biochemical Networks Modeling Group at the University of Manchester, UK, and is built on the Condor-COPASI software. Cloud-COPASI is written in Python using the Django web application framework. Bosco is used to connect to remote compute pools, and HTCondor is used to manage job allocation on EC2 pools.

License

The files in the /html5up/ directory contain the ZeroFour HTML template
package provided by HTML5 Up!. These files are released under the CCA 3.0
license (/html5up/LICENSE.txt)

All other files, unless otherwise stated, are released under the GNU GENERAL
PUBLIC LICENSE Version 3 (/LICENSE.txt)

They are distributed in the hope that they will be useful
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.