System-3 Malaise Trap Data - dataset used to assess impact on bioinformatics analyses (PhD Thesis Project)
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datasets-pid-dataframes
datasets-pid-lists
LICENSE
README

README

README


Created:        2017-09-17
Author:         Eddie Ma
E-mail:         ema@uoguelph.ca


These files are the companion data for my PhD thesis --

Process IDs are unique labels used to query sequences on the Barcode of Life Datasystems platform.

This data was queried from boldsystems.org in 2016 December.

This data is selected from public records in The Canadian National Parks Malaise Project (CNPM).
For more on CNPM, see -- http://biodiversitygenomics.net/projects/cnp/

I assume no ownership of this data, and I've provided it here as a convenience for replicability of my research.


##### Repository Contents #####

datasets-pid-lists/                     -- these files are lists of Process IDs used
                                            to query BOLD Systems (boldsystems.org)
-- ch5-ch8-pids-2of2.txt                -- dataset for Chapter 5 (Impact Assessment Overview)
                                            and Chapter 8 (Phylogenetic Tree Building)
-- ch5-ch8-pids-1of2.txt                -- dataset for Chapter 5 (Impact Assessment Overview)
                                            and Chapter 8 (Phylogenetic Tree Building)
-- ch6-barcodegap-pids.txt              -- dataset for Chapter 6 (Barcode Gap)
-- ch7-alltaxa-pids.txt                 -- dataset for Chapter 7 (Species Identification and Discovery)
-- ch7-groupbytaxa-pids.txt             -- dataset for Chapter 7 (Species Identification and Discovery)

datasets-pid-dataframes/                -- these files are tables of Process IDs and some additional
                                            accession or taxonomic information
-- ch5-ch8-trees-pid-dataframe.tsv      -- dataset for Chapter 5 (Impact Assessment Overview)
                                            and Chapter 8 (Phylogenetic Tree Building)
-- ch6-barcodegap-pid-dataframe.tsv     -- dataset for Chapter 6 (Barcode Gap)
-- ch6-barcodegap-pid-dataframe.xlsx    -- dataset for Chapter 6 (Barcode Gap)
-- ch7-alltaxa-pid-dataframe.tsv        -- dataset for Chapter 7 (Species Identification and Discovery)
-- ch7-alltaxa-pid-dataframe.xlsx       -- dataset for Chapter 7 (Species Identification and Discovery)
-- ch7-groupbytaxa-pid-dataframe.tsv    -- dataset for Chapter 7 (Species Identification and Discovery)
-- ch7-groupbytaxa-pid-dataframe.xlsx   -- dataset for Chapter 7 (Species Identification and Discovery)


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