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pooled-saliva-testing

This repo supports Watkins et al. "Pooling saliva samples to aid SARS-CoV-2 testing demands" https://www.medrxiv.org/content/10.1101/2020.09.02.20183830v1

The repo is organized into

  1. Statistical analysis, the code for the statistical analysis
  2. Pooling analysis, a wrapper to generate pooling figures and function code.
  3. Data, which has the data from the experimental results

Run paper_wrapper.R will reproduce paper results. Note, if there is an error check the encoding on the csv files.

Authors: Anne E. Watkins, Eli P. Fenichel, Daniel M. Weinberger, Chantal B.F. Vogels, Chaney C. Kalinich, Doug E. Brackney, Arnau Casanovas-Massana, Adam J. Moore, M. Catherine Muenker, Isabel M. Ott, Christina A. Harden, Maura Nakahata, Maria Tokuyama, Melissa Campbell, Rupak Datta, Charles S. Dela Cruz, Shelli Farhadian, Akiko Iwasaki, Albert I. Ko, Nathan D. Grubaugh, Anne L. Wyllie, and the Yale IMPACT Research Team.

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supports Watkins et al. "Pooling saliva samples to aid SARS-CoV-2 testing demands"

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