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This wiki serves as the central hub for documentation, guidelines, and collaborative development within the HdMBioinfo Group. The project aims to establish a standardized and clinically relevant workflow for microbiome data processing, supporting applications in precision medicine, diagnostics, and microbiome research.
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General Overview
Context, clinical rationale and high level objectives. -
Data Management Plan
Storage, retention, access control and security policies. -
File Nomenclature Key concepts, naming conventions and the official metadata dictionary.
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Modules Modular workflow diagrams, tool selection, QC checkpoints and container profiles.
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Result Integration and Clinical Reporting Data Upload, Taxonomy, Diversity, Lifestyle, Report Summary
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Validation
Tip: Use the sidebar or the table of contents at the top of each page to navigate quickly.
This wiki exists to:
- Reduce onboarding time for new team-mates and external collaborators.
- Document decisions - why we chose a tool, a threshold, a naming scheme.
- Serve as living documentation of the wiki itself, outlining its structure, update rules and style guide.
- Keep everyone aligned across wet lab, bioinformatics and clinical teams.