pathfindR.data: Data Package for pathfindR: Enrichment Analysis Utilizing Active Subnetworks

Overview

pathfindR.data is the data package for pathfindR, containing data needed to use pathfindR, including protein-protein interaction network data, data related to gene sets and example input/output data.

pathfindR

pathfindR is a tool for enrichment analysis via active subnetworks. The package also offers functionalities to cluster the enriched terms and identify representative terms in each cluster, to score the enriched terms per sample and to visualize analysis results.

The functionalities of pathfindR is described in detail in Ulgen E, Ozisik O, Sezerman OU. 2019. pathfindR: An R Package for Comprehensive Identification of Enriched Pathways in Omics Data Through Active Subnetworks. Front. Genet. https://doi.org/10.3389/fgene.2019.00858

For detailed documentation, see pathfindR’s website.