Where is one2one or many2many mapping in annotation result?

[olgabot]

Hello,
Thank you so much for creating this great tool! We're using it for annotating ticks. I first heard about the tool from Detlev Arendt who showed how they obtained human gene annotations on their sponge genes, including one2one and one2many orthology mapping. I was excited to run eggNOG our transcriptome data (PacBio Iso-Seq full transcripts) and I used the default settings on the web tool to get some very interesting results, however, I did not see a column in the data that indicated the type of orthology mapping for the gene. Am I missing something?
Thank you!
Warmest,
Olga

[Cantalapiedra]

Dear Olga,

sorry for the delay answering.
We will try to add this information in the next version if possible.
Currently, you can ask eggnog-mapper to return only one2one, one2many, results and so on, but the relationship is not included in the output.

[Cantalapiedra]

This information can be obtained currently using --report_orthologs