diff --git a/BlastHTTPTest.hs b/BlastHTTPTest.hs index dfa7e95..34fd384 100644 --- a/BlastHTTPTest.hs +++ b/BlastHTTPTest.hs @@ -1,5 +1,5 @@ -- | BlastHTTP test script --- /scr/kronos/egg/ghc/ghc/bin/runghc BlastHTTPTest.hs /home/mescalin/egg/initialfasta/RybB/aeromonas.fa +--runghc -package-db --ghc-arg=.cabal-sandbox/x86_64-linux-ghc-8.0.1-packages.conf.d/ BlastHTTPTest.hs aeromonas.fa module Main where @@ -24,7 +24,7 @@ main = do putStrLn "Test:" inputFasta <- readFasta input_file --let blastQuery = BlastHTTPQuery (Just "ebi") (Just "blastn") (Just "em_rel_mam") (Just fastaSeqData) Nothing - let blastQuery = BlastHTTPQuery (Just "ncbi") (Just "blastn") (Just "nt") inputFasta Nothing + let blastQuery = BlastHTTPQuery (Just "ncbi") (Just "blastn") (Just "nt") inputFasta Nothing (Just (7200000000 ::Int)) blastOutput <- blastHTTP blastQuery print blastOutput diff --git a/aeromonas.fa b/aeromonas.fa new file mode 100644 index 0000000..6260882 --- /dev/null +++ b/aeromonas.fa @@ -0,0 +1,2 @@ +>Aeromonas salmonicida subsp. salmonicida A449 +GAAGGCACGACAUUGCUCACAUUGCUUCCAGUUAUAGGGCCAGUUCUUCUGGCCCUCUUUUU