RNAlien - unsupervised RNA family model construction
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README.md

RNAlien

RNAlien is a tool for automatic construction of RNAfamily models from a single sequence.

It is available as a commandline tool, for testing or construction of few sequences the webservice can be used.

The source code of RNAlien, as well as the webserver is open source and available via GitHub and Hackage (License GPL-3):

  • GitHub Build Status Hackage Bioconda Docker Repository on Quay
  • GitHub Build Status

TaxonomyTools which can be used to visualise the organisms included in a RNAlien result can be found here (License GPL-3):

  • GitHub Build Status Hackage

    For instruction how to use RNAlien please see the Help page.

    Dependencies:

    Installation via bioconda

    RNAlien can be installed with all dependencies via conda. Once you have conda installed simply type:

     conda install -c bioconda -c conda-forge rnalien=1.3.7 
    

    Available as docker container

    RNAlien is available with all dependencies via biocontainer. Install docker

     docker pull quay.io/biocontainers/rnalien:1.3.7--pl5.22.0_0
     docker run -i -t quay.io/biocontainers/rnalien:1.3.7--pl5.22.0_0 bash
    

    Installation via cabal-install

    RNAlien is implemented in Haskell and can be installed via the Haskell package distribution sytem cabal. Once you have cabal installed simply type:

     cabal install RNAlien
    

Installation via stackage

 RNAlien can also be install via the Haskell package distribution sytem [Stackage](https://www.stackage.org/), which guarantees consistent package builds. Once you have stackage installed simply type:

     stack install RNAlien

Precompiled Executables

*   Fedora (ghc-7.8.4)[RNAlien 1.1.0 x86_64](http://www.tbi.univie.ac.at/~egg/RNAlien/fedora22-ghc7.8.4/RNAlien-1.1.0)
*   Archlinux (ghc-7.10.3) [RNAlien 1.1.0 x86_64](http://www.tbi.univie.ac.at/~egg/RNAlien/archlinux-ghc7.10.3/RNAlien-1.1.0)