NSMB Tutorials are now available under the 'tutorials' folder as RMarkdown files. The HTML workflows for protein-protein interactions and protein-RNA interactions are available via the links provided.
This package is designed to analyze and visualize crosslinking (XL) data from multiple sources (mainly XL-MS and RBDmap).
Creation of PDB files for missing peptides
Mutation and Uniprot Integration (coming soon!)
- Control distances for PDB structures
- Frequency of RNA-likened amino acids
Amino acid frequency heatmaps
2D: xiNET output
3D: PyMOL output
To download the functions with documentation:
This is still the beta release of the package/documentation so please contact me if you come across any issues!