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100755 390 lines (345 sloc) 19.325 kb
c3ba50b Added Log4J configuration file.
egonw authored
1 <project name="CDK" default="compile" basedir=".">
3d221c1 Added additional PDBReader tests.
yeldar authored
2
631caf1 Fixed some severe bugs in the vicinity sampler
steinbeck authored
3 <property name="build.compiler" value="modern" />
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
4 <property name="build" value="build" />
5 <property name="sourcedist" value="sourcedist" />
6 <property name="dist" value="dist" />
43d9399 Splitted cdk.jar into cdk-core.jar and cdk-extra.jar.
egonw authored
7 <property name="doc" value="doc" />
bd0b7db Added JUnit test for libio/joelib/Convertor.java. Adapted build.xml
egonw authored
8 <property name="src" value="src" />
9 <property name="lib" value="jar" />
6bcf896 Edited build file in order to reflect the move of the src folder
steinbeck authored
10 <property name="src.tests" value="${src}/org/openscience/cdk/test" />
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
11 <property name="reports.tests" value="reports" />
943daec Location of Java3D classes is now settable. If Java3D is not installe…
egonw authored
12 <property name="pathtojava3d" value="" />
7ce93c7 Added cdk.Atom <-> joelib.molecule.JOEAtom Convertor procedure.
egonw authored
13 <property name="pathtojoelib" value="../../JoeLib/joelib/" />
943daec Location of Java3D classes is now settable. If Java3D is not installe…
egonw authored
14
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
15 <path id="project.class.path">
16 <pathelement
17 location="/usr/lib/j2sdk1.3/jre/lib/rt.jar" />
18
19 <pathelement location="." />
6bcf896 Edited build file in order to reflect the move of the src folder
steinbeck authored
20 <fileset dir="${lib}">
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
21 <include name="*.jar" />
22 </fileset>
943daec Location of Java3D classes is now settable. If Java3D is not installe…
egonw authored
23 <fileset dir="${pathtojava3d}">
24 <include name="*.jar" />
25 </fileset>
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
26 </path>
27
28 <target name="init">
29 <tstamp />
dd25372 Some tests for the SMILESGenerator went wrong and this is the test co…
steinbeck authored
30 <mkdir dir="${doc}/api" />
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
31 <mkdir dir="${build}" />
32 <mkdir dir="${sourcedist}" />
33 <mkdir dir="${dist}" />
34 <mkdir dir="${reports.tests}" />
35 </target>
36
37 <target name="clean">
38 <delete>
39 <fileset dir="." includes="**/*~" />
40 <fileset dir="." includes="**/*.class" />
41 <fileset dir="." includes="*.tar.gz" />
42 <fileset dir="." includes="*.zip" />
43 </delete>
44
45 <delete dir="${build}" />
46 <delete dir="${sourcedist}" />
47 <delete dir="${reports.tests}" />
48 </target>
ad524ca Followed Brian's recommendation and reduced number of hashed sequences
steinbeck authored
49
50 <target name="compile" depends="init">
51 <echo message="Compiling only the classes that don't use Java3d." />
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
52
53 <echo
54 message="Use 'compile-with-java3d' target for full Java3D support. " />
55
56 <mkdir dir="${build}" />
57
ba9dadc RandomGenerator now finally working
steinbeck authored
58 <javac destdir="${build}" optimize="off" debug="on" deprecation="off">
6bcf896 Edited build file in order to reflect the move of the src folder
steinbeck authored
59 <src path="${src}" />
e55314e - Removed replaced lib-dist target.
egonw authored
60 <exclude name="${sourcedist}/**" />
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
61 <exclude
bfc7b0b Do not compile Viewer.java when not in compile-with-java3d mode.
egonw authored
62 name="org/openscience/cdk/applications/Viewer.java" />
63 <exclude
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
64 name="org/openscience/cdk/renderer/AcceleratedRenderer3D*" />
65 <exclude
66 name="org/openscience/cdk/renderer/OrbitalsRenderer3D*" />
67 <exclude
68 name="org/openscience/cdk/test/AcceleratedRenderer3DTest.java" />
69 <exclude
70 name="org/openscience/cdk/test/OrbitalsRenderer3DTest.java" />
e1f7ebb Do not try to build classes that depend on classes that depend on Java3D
egonw authored
71 <exclude
72 name="org/openscience/cdk/test/VisualGaussiansCalculationTest.java" />
73 <exclude
74 name="org/openscience/cdk/test/ZMatrixReaderTest.java" />
7ce93c7 Added cdk.Atom <-> joelib.molecule.JOEAtom Convertor procedure.
egonw authored
75
76 <!-- exclude libio classes that require additional
77 libraries, and are compiled elsewhere -->
78 <exclude name="org/openscience/cdk/libio/**" />
bd0b7db Added JUnit test for libio/joelib/Convertor.java. Adapted build.xml
egonw authored
79 <exclude name="org/openscience/cdk/test/libio/**" />
7ce93c7 Added cdk.Atom <-> joelib.molecule.JOEAtom Convertor procedure.
egonw authored
80
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
81 <classpath refid="project.class.path" />
82 </javac>
83
84 <copy todir="${build}">
6bcf896 Edited build file in order to reflect the move of the src folder
steinbeck authored
85 <fileset dir="${src}" includes="**/Test-*" />
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
86 </copy>
87 </target>
8713d91 Finished work on basic JOELib <-> CDK convertor.
egonw authored
88
7ce93c7 Added cdk.Atom <-> joelib.molecule.JOEAtom Convertor procedure.
egonw authored
89 <target name="compile-libio" depends="init">
90 <!-- Task to build to libio classes. Clearly, this requires extra
91 extra jars, and these should be located in ${lib}/libio -->
92
93 <javac destdir="${build}" optimize="off" debug="on" deprecation="off">
94 <src path="${src}/org/openscience/cdk/libio" />
bd0b7db Added JUnit test for libio/joelib/Convertor.java. Adapted build.xml
egonw authored
95 <src path="${src}/org/openscience/cdk/test/libio" />
7ce93c7 Added cdk.Atom <-> joelib.molecule.JOEAtom Convertor procedure.
egonw authored
96
97 <classpath refid="project.class.path" />
98 <classpath>
99 <fileset dir="${lib}/libio">
100 <include name="*.jar" />
101 </fileset>
102 </classpath>
103 </javac>
104 </target>
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
105
106 <target name="compile-with-java3d" depends="init">
107 <mkdir dir="${build}" />
108
0a83d44 Moved HTML API generation to javadoc.xml. Added DocBook XML API gener…
egonw authored
109 <javac destdir="${build}" optimize="on" deprecation="off" debug="on">
6bcf896 Edited build file in order to reflect the move of the src folder
steinbeck authored
110 <src path="${src}" />
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
111
8713d91 Finished work on basic JOELib <-> CDK convertor.
egonw authored
112 <!-- exclude libio classes that require additional
113 libraries, and are compiled elsewhere -->
114 <exclude name="org/openscience/cdk/libio/**" />
aa6535c Don't compile java source files in ${sourcedist} with java3D too.
egonw authored
115
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
116 <classpath refid="project.class.path" />
117 </javac>
118 </target>
119
43d9399 Splitted cdk.jar into cdk-core.jar and cdk-extra.jar.
egonw authored
120 <target name="dist.init">
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
121 <mkdir dir="${dist}/jar" />
122
123 <mkdir
124 dir="${build}/org/openscience/cdk/config" />
125
126 <copy
6bcf896 Edited build file in order to reflect the move of the src folder
steinbeck authored
127 file="${src}/org/openscience/cdk/config/isotopes.xml"
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
128 tofile="${build}/org/openscience/cdk/config/isotopes.xml" />
129 <copy
6bcf896 Edited build file in order to reflect the move of the src folder
steinbeck authored
130 file="${src}/org/openscience/cdk/config/structgen_atomtypes.xml"
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
131 tofile="${build}/org/openscience/cdk/config/structgen_atomtypes.xml" />
c3ba50b Added Log4J configuration file.
egonw authored
132 <copy
6bcf896 Edited build file in order to reflect the move of the src folder
steinbeck authored
133 file="${src}/org/openscience/cdk/config/log4j.properties"
c3ba50b Added Log4J configuration file.
egonw authored
134 tofile="${build}/org/openscience/cdk/config/log4j.properties" />
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
135
136 <mkdir
137 dir="${build}/org/openscience/cdk/io/cml/data" />
138
139 <copy
6bcf896 Edited build file in order to reflect the move of the src folder
steinbeck authored
140 file="${src}/org/openscience/cdk/io/cml/data/cml1_0.dtd"
f8fea66 Put new CML DTDs in the distribution.
egonw authored
141 tofile="${build}/org/openscience/cdk/io/cml/data/cml1_0.dtd" />
142 <copy
6bcf896 Edited build file in order to reflect the move of the src folder
steinbeck authored
143 file="${src}/org/openscience/cdk/io/cml/data/cml1_0_1.dtd"
f8fea66 Put new CML DTDs in the distribution.
egonw authored
144 tofile="${build}/org/openscience/cdk/io/cml/data/cml1_0_1.dtd" />
43d9399 Splitted cdk.jar into cdk-core.jar and cdk-extra.jar.
egonw authored
145 </target>
d313d03 Also include cml.dtd in normal jar.
egonw authored
146
43d9399 Splitted cdk.jar into cdk-core.jar and cdk-extra.jar.
egonw authored
147 <target name="dist-core" depends="compile, dist.init">
148 <jar jarfile="${dist}/jar/cdk-core.jar">
149 <fileset dir="${build}">
150 <!-- As proposed in CDK-RFC 2 -->
151 <include name="org/openscience/cdk/AtomContainer.class" />
152 <include name="org/openscience/cdk/AtomEnumeration.class" />
153 <include name="org/openscience/cdk/Atom.class" />
154 <include name="org/openscience/cdk/AtomType.class" />
155 <include name="org/openscience/cdk/BioPolymer.class" />
156 <include name="org/openscience/cdk/Bond.class" />
bd0b7db Added JUnit test for libio/joelib/Convertor.java. Adapted build.xml
egonw authored
157 <include name="org/openscience/cdk/CDKConstants.class" />
43d9399 Splitted cdk.jar into cdk-core.jar and cdk-extra.jar.
egonw authored
158 <include name="org/openscience/cdk/ChemModel.class" />
159 <include name="org/openscience/cdk/ChemObject.class" />
bd0b7db Added JUnit test for libio/joelib/Convertor.java. Adapted build.xml
egonw authored
160 <include name="org/openscience/cdk/ChemObjectListener.class" />
43d9399 Splitted cdk.jar into cdk-core.jar and cdk-extra.jar.
egonw authored
161 <include name="org/openscience/cdk/ChemSequence.class" />
162 <include name="org/openscience/cdk/ElectronContainer.class" />
163 <include name="org/openscience/cdk/Element.class" />
bd0b7db Added JUnit test for libio/joelib/Convertor.java. Adapted build.xml
egonw authored
164 <include name="org/openscience/cdk/event/ChemObjectChangeEvent.class" />
165 <include name="org/openscience/cdk/exception/CDKException.class" />
166 <include name="org/openscience/cdk/exception/NoSuchAtomException.class" />
43d9399 Splitted cdk.jar into cdk-core.jar and cdk-extra.jar.
egonw authored
167 <include name="org/openscience/cdk/Isotope.class" />
168 <include name="org/openscience/cdk/Molecule.class" />
169 <include name="org/openscience/cdk/Monomer.class" />
170 <include name="org/openscience/cdk/Polymer.class" />
171 <include name="org/openscience/cdk/Ring.class" />
172 <include name="org/openscience/cdk/RingSet.class" />
173 <include name="org/openscience/cdk/SetOfMolecules.class" />
174 </fileset>
175 </jar>
176 </target>
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
177
43d9399 Splitted cdk.jar into cdk-core.jar and cdk-extra.jar.
egonw authored
178 <target name="dist-extra" depends="dist-core">
179 <jar jarfile="${dist}/jar/cdk-extra.jar">
180 <fileset dir="${build}">
181 <include name="**/cdk/**" />
182 <!-- Exclude core classes -->
183 <exclude name="org/openscience/cdk/AtomContainer.class" />
184 <exclude name="org/openscience/cdk/AtomEnumeration.class" />
185 <exclude name="org/openscience/cdk/Atom.class" />
186 <exclude name="org/openscience/cdk/AtomType.class" />
187 <exclude name="org/openscience/cdk/BioPolymer.class" />
188 <exclude name="org/openscience/cdk/Bond.class" />
bd0b7db Added JUnit test for libio/joelib/Convertor.java. Adapted build.xml
egonw authored
189 <exclude name="org/openscience/cdk/CDKConstants.class" />
43d9399 Splitted cdk.jar into cdk-core.jar and cdk-extra.jar.
egonw authored
190 <exclude name="org/openscience/cdk/ChemModel.class" />
191 <exclude name="org/openscience/cdk/ChemObject.class" />
bd0b7db Added JUnit test for libio/joelib/Convertor.java. Adapted build.xml
egonw authored
192 <exclude name="org/openscience/cdk/ChemObjectListener.class" />
43d9399 Splitted cdk.jar into cdk-core.jar and cdk-extra.jar.
egonw authored
193 <exclude name="org/openscience/cdk/ChemSequence.class" />
194 <exclude name="org/openscience/cdk/ElectronContainer.class" />
195 <exclude name="org/openscience/cdk/Element.class" />
bd0b7db Added JUnit test for libio/joelib/Convertor.java. Adapted build.xml
egonw authored
196 <exclude name="org/openscience/cdk/event/ChemObjectChangeEvent.class" />
197 <exclude name="org/openscience/cdk/exception/CDKException.class" />
198 <exclude name="org/openscience/cdk/exception/NoSuchAtomException.class" />
43d9399 Splitted cdk.jar into cdk-core.jar and cdk-extra.jar.
egonw authored
199 <exclude name="org/openscience/cdk/Isotope.class" />
200 <exclude name="org/openscience/cdk/Molecule.class" />
201 <exclude name="org/openscience/cdk/Monomer.class" />
202 <exclude name="org/openscience/cdk/Polymer.class" />
203 <exclude name="org/openscience/cdk/Ring.class" />
204 <exclude name="org/openscience/cdk/RingSet.class" />
205 <exclude name="org/openscience/cdk/SetOfMolecules.class" />
8713d91 Finished work on basic JOELib <-> CDK convertor.
egonw authored
206 <!-- Exclude libio classes -->
207 <exclude name="org/openscience/cdk/libio/**" />
bd0b7db Added JUnit test for libio/joelib/Convertor.java. Adapted build.xml
egonw authored
208 <exclude name="org/openscience/cdk/test/libio/**" />
43d9399 Splitted cdk.jar into cdk-core.jar and cdk-extra.jar.
egonw authored
209 </fileset>
210 </jar>
211 </target>
212
8713d91 Finished work on basic JOELib <-> CDK convertor.
egonw authored
213 <target name="dist-libio" depends="compile-libio">
214 <jar jarfile="${dist}/jar/cdk-libio.jar">
215 <fileset dir="${build}">
216 <include name="org/openscience/cdk/libio/**" />
bd0b7db Added JUnit test for libio/joelib/Convertor.java. Adapted build.xml
egonw authored
217 <include name="org/openscience/cdk/test/libio/**" />
8713d91 Finished work on basic JOELib <-> CDK convertor.
egonw authored
218 </fileset>
219 </jar>
220 </target>
221
43d9399 Splitted cdk.jar into cdk-core.jar and cdk-extra.jar.
egonw authored
222 <target name="dist-cml" depends="dist-core">
a33e1a6 Include CDOPI classes in cdk-cml.jar
egonw authored
223 <jar jarfile="${dist}/jar/cdk-cml.jar">
224 <fileset dir="${build}">
225 <include name="org/openscience/cdk/io/cml/**" />
226 <include name="org/openscience/cdk/io/cml/cdopi/**" />
90976f0 Include LoggingTool in cdk-cml.jar.
egonw authored
227 <include name="org/openscience/cdk/tools/LoggingTool*" />
228 <include name="org/openscience/cdk/config/log4j.properties" />
a33e1a6 Include CDOPI classes in cdk-cml.jar
egonw authored
229 </fileset>
230 </jar>
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
231 </target>
232
43d9399 Splitted cdk.jar into cdk-core.jar and cdk-extra.jar.
egonw authored
233 <target name="dist" depends="dist-extra" />
ce6c169 Include config and data files in dist-with-java3d too.
egonw authored
234
43d9399 Splitted cdk.jar into cdk-core.jar and cdk-extra.jar.
egonw authored
235 <target name="dist-with-java3d" depends="compile-with-java3d, dist-core">
236 <jar jarfile="${dist}/jar/cdk-extra-with-java3d.jar">
237 <fileset dir="${build}">
238 <include name="**/cdk/**" />
239 <!-- Exclude core classes -->
240 <exclude name="org/openscience/cdk/AtomContainer.class" />
241 <exclude name="org/openscience/cdk/AtomEnumeration.class" />
242 <exclude name="org/openscience/cdk/Atom.class" />
243 <exclude name="org/openscience/cdk/AtomType.class" />
244 <exclude name="org/openscience/cdk/BioPolymer.class" />
245 <exclude name="org/openscience/cdk/Bond.class" />
246 <exclude name="org/openscience/cdk/ChemModel.class" />
247 <exclude name="org/openscience/cdk/ChemObject.class" />
248 <exclude name="org/openscience/cdk/ChemSequence.class" />
249 <exclude name="org/openscience/cdk/ElectronContainer.class" />
250 <exclude name="org/openscience/cdk/Element.class" />
251 <exclude name="org/openscience/cdk/Isotope.class" />
252 <exclude name="org/openscience/cdk/Molecule.class" />
253 <exclude name="org/openscience/cdk/Monomer.class" />
254 <exclude name="org/openscience/cdk/Polymer.class" />
255 <exclude name="org/openscience/cdk/Ring.class" />
256 <exclude name="org/openscience/cdk/RingSet.class" />
257 <exclude name="org/openscience/cdk/SetOfMolecules.class" />
8713d91 Finished work on basic JOELib <-> CDK convertor.
egonw authored
258 <!-- Exclude libio classes -->
259 <exclude name="org/openscience/cdk/libio/**" />
43d9399 Splitted cdk.jar into cdk-core.jar and cdk-extra.jar.
egonw authored
260 </fileset>
261 </jar>
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
262 </target>
263
264 <target name="sourcedist" depends="init">
265 <copy todir="${sourcedist}">
266 <fileset dir="." includes="**/*java" />
267 <fileset dir="." includes="build.xml" />
268 </copy>
e1f7ebb Do not try to build classes that depend on classes that depend on Java3D
egonw authored
269 <copy todir="${sourcedist}/org/openscience/cdk/config/isotopes.xml">
5d39146 Fixed bug in build.xml.
egonw authored
270 <fileset dir="${src}/org/openscience/cdk/config/"
e1f7ebb Do not try to build classes that depend on classes that depend on Java3D
egonw authored
271 includes="*" />
272 </copy>
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
273 <tar tarfile="cdk-source-${DSTAMP}.tar"
274 basedir="${sourcedist}" includes="**" />
275 <gzip zipfile="cdk-source-${DSTAMP}.tar.gz"
276 src="cdk-source-${DSTAMP}.tar" />
277 <delete file="cdk-source-${DSTAMP}.tar" />
278 <zip zipfile="cdk-source-${DSTAMP}.zip"
279 basedir="${sourcedist}" includes="**" />
280 </target>
281
282 <target name="website">
283 <java classname="org.apache.xalan.xslt.Process"
284 args="-IN ../website.xml -XSL ../lib/cdkwebsite.xsl"
285 dir="doc/source/bin" fork="yes">
286 <classpath>
287 <pathelement
288 location="jar/xerces-1.3.0.jar" />
289
290 <pathelement
291 location="jar/xalan-2.0.1.jar" />
292
293 <pathelement
294 location="jar/bsf-2.0.1.jar" />
295 </classpath>
296 </java>
297 </target>
298
299 <target name="test" depends="clean,dist">
300 <junit printsummary="yes" haltonfailure="yes">
301 <classpath>
302 <pathelement
303 location="${dist}/jar/cdk.jar" />
304
305 <pathelement
306 path="${java.class.path}" />
307
308 <pathelement location="." />
309
6bcf896 Edited build file in order to reflect the move of the src folder
steinbeck authored
310 <fileset dir="${lib}">
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
311 <include name="*.jar" />
312 </fileset>
313 </classpath>
314 <test
315 name="org.openscience.cdk.test.CDKTests"
316 haltonfailure="no"
317 todir="${reports.tests}"
318 outfile="result">
319 <formatter type="plain" />
320 </test>
321 </junit>
322 </target>
323
bd0b7db Added JUnit test for libio/joelib/Convertor.java. Adapted build.xml
egonw authored
324 <target name="test-libio" depends="dist-libio">
325 <java classname="org.openscience.cdk.test.libio.joelib.JOELibIOTest" fork="yes">
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
326 <classpath>
7b0e32f Updated run-with-java3d task for some recent changes.
egonw authored
327 <pathelement location="${dist}/jar/cdk-core.jar" />
bd0b7db Added JUnit test for libio/joelib/Convertor.java. Adapted build.xml
egonw authored
328 <pathelement location="${dist}/jar/cdk-extra.jar" />
329 <pathelement location="${dist}/jar/cdk-libio.jar" />
7b0e32f Updated run-with-java3d task for some recent changes.
egonw authored
330 <pathelement path="${java.class.path}" />
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
331 <pathelement location="." />
6bcf896 Edited build file in order to reflect the move of the src folder
steinbeck authored
332 <fileset dir="${lib}">
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
333 <include name="*.jar" />
334 </fileset>
bd0b7db Added JUnit test for libio/joelib/Convertor.java. Adapted build.xml
egonw authored
335 <fileset dir="${lib}/libio">
7b0e32f Updated run-with-java3d task for some recent changes.
egonw authored
336 <include name="*.jar" />
337 </fileset>
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
steinbeck authored
338 </classpath>
339 </java>
340 </target>
341
bd0b7db Added JUnit test for libio/joelib/Convertor.java. Adapted build.xml
egonw authored
342 <target name="run-with-java3d"
343 depends="dist-with-java3d">
344 <java
345 classname="org.openscience.cdk.test.OrbitalsRenderer3DTest"
346 fork="yes">
347 <arg value="data/reserpine.mol" />
348
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349 <classpath>
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350 <pathelement location="${dist}/jar/cdk-core.jar" />
bd0b7db Added JUnit test for libio/joelib/Convertor.java. Adapted build.xml
egonw authored
351 <pathelement location="${dist}/jar/cdk-extra-with-java3d.jar" />
6bcf896 Edited build file in order to reflect the move of the src folder
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352 <pathelement path="${java.class.path}" />
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
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353 <pathelement location="." />
6bcf896 Edited build file in order to reflect the move of the src folder
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354 <fileset dir="${lib}">
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
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355 <include name="*.jar" />
356 </fileset>
bd0b7db Added JUnit test for libio/joelib/Convertor.java. Adapted build.xml
egonw authored
357 <fileset dir="${pathto3djava}">
358 <include name="*.jar" />
359 </fileset>
5e15181 The class org.openscience.cdk.structgen.SingleStructureRandomGenerator
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360 </classpath>
361 </java>
362 </target>
363
bd0b7db Added JUnit test for libio/joelib/Convertor.java. Adapted build.xml
egonw authored
364 <target name="run" depends="dist">
365 <java classname="org.openscience.cdk.test.FingerprinterTest" fork="yes">
8713d91 Finished work on basic JOELib <-> CDK convertor.
egonw authored
366 <classpath>
367 <pathelement location="${dist}/jar/cdk-core.jar" />
368 <pathelement location="${dist}/jar/cdk-extra.jar" />
369 <pathelement path="${java.class.path}" />
370 <pathelement location="." />
371 <fileset dir="${lib}">
372 <include name="*.jar" />
373 </fileset>
374 </classpath>
375 </java>
376 </target>
377
378 <target name="javadoc" depends="init">
dd25372 Some tests for the SMILESGenerator went wrong and this is the test co…
steinbeck authored
379 <javadoc packagenames="org.openscience.cdk.*"
6bcf896 Edited build file in order to reflect the move of the src folder
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380 sourcepath="${src}"
dd25372 Some tests for the SMILESGenerator went wrong and this is the test co…
steinbeck authored
381 defaultexcludes="yes"
382 destdir="doc/api"
383 author="true"
384 version="true"
385 use="true">
386 <classpath refid="project.class.path" />
387 </javadoc>
388 </target>
c5eb7ec Added Ant build file.
egonw authored
389 </project>
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