No description, website, or topics provided.
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
.gitignore
README.md
metaboliteSpecies.groovy
wikidata.rq

README.md

Metabolite foundInTaxon Species Nanopublications

Nanopublications sourced from Wikidata, taking into account provenance given, ideally with DOI.

Generating

First, the data is downloaded from Wikidata:

curl -H "Accept: text/tab-separated-values" \
     --data-urlencode query@wikidata.rq \
     -G https://query.wikidata.org/bigdata/namespace/wdq/sparql \
     -o data.tsv

Then a Groovy script converts it into nanopublications:

groovy metaboliteSpecies.groovy > metaboliteSpecies.trig

License

The data is CCZero. The code is GPL v3.