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bamtools @ 02c2be8
fastahack @ 5c12064
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Makefile
README
bamprofile.cpp

README

-- bamprofile --


description:

Estimates the error profile of alignments by counting mismatches and gaps
relative to the number of aligned bases.  Generates a report which describes
the distribution of mismatching blocks and gaps, as well as average rates of
putative differences, average coverage of mapped reads, and other useful
statistics.


obtaining:

This repository contains submodules, so use:

    git clone --recursive ...

to download.


author: Erik Garrison <erik.garrison@bc.edu>
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