compilation of bamfiltertech and alleles #29

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hyphaltip opened this Issue Mar 15, 2012 · 1 comment

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@hyphaltip

At least one set of errors without the INCLUDE not -I../bamtools/include/api

make alleles
g++ -O3 -I../bamtools/src -I../bamtools/include/api -c alleles.cpp
errors when compiling:
alleles.cpp:42: error: 'AlleleFreeList Allele::freeList' is not a static member of 'class Allele'
alleles.cpp: In function 'int main(int, char*
)':
alleles.cpp:53: error: no matching function for call to 'AlleleParser::getNextAlleles(std::map<std::basic_string<char, std::char_traits, std::allocator >, std::vector<Allele_, std::allocator<Allele*> >, std::less<std::basic_string<char, std::char_traits, std::allocator > >, std::allocator<std::pair<const std::basic_string<char, std::char_traits, std::allocator >, std::vector<Allele*, std::allocator<Allele*> > > > >&, int&)'
AlleleParser.h:210: note: candidates are: bool AlleleParser::getNextAlleles(Samples&, int)

make bamfiltertech
g++ -O3 -I../bamtools/src -I../bamtools/include/api -c bamfiltertech.cpp
bamfiltertech.cpp: In function 'int main(int, char*)':
bamfiltertech.cpp:87: error: no matching function for call to 'BamTools::BamWriter::Open(const char [7], std::string&, const std::vector<BamTools::RefData, std::allocatorBamTools::RefData >&, bool&)'
../bamtools/include/api/BamWriter.h:50: note: candidates are: bool BamTools::BamWriter::Open(const std::string&, const std::string&, const BamTools::RefVector&)
../bamtools/include/api/BamWriter.h:54: note: bool BamTools::BamWriter::Open(const std::string&, const BamTools::SamHeader&, const BamTools::RefVector&)
make: *
* [bamfiltertech.o] Error 1

@ekg
Owner
ekg commented Mar 15, 2012

I think I will remove reference to these utilities from the repository.
Sorry for the trouble, -Erik

On Wed, Mar 14, 2012 at 11:42 PM, Jason Stajich <
reply@reply.github.com

wrote:

At least one set of errors without the INCLUDE not
-I../bamtools/include/api

make alleles
g++ -O3 -I../bamtools/src -I../bamtools/include/api -c alleles.cpp
errors when compiling:
alleles.cpp:42: error: 'AlleleFreeList Allele::freeList' is not a static
member of 'class Allele'
alleles.cpp: In function 'int main(int, char*
)':
alleles.cpp:53: error: no matching function for call to
'AlleleParser::getNextAlleles(std::map<std::basic_string<char,
std::char_traits, std::allocator >, std::vector<Allele_,
std::allocator<Allele*> >, std::less<std::basic_string<char,
std::char_traits, std::allocator > >,
std::allocator<std::pair<const std::basic_string<char,
std::char_traits, std::allocator >, std::vector<Allele*,
std::allocator<Allele*> > > > >&, int&)'
AlleleParser.h:210: note: candidates are: bool
AlleleParser::getNextAlleles(Samples&, int)

make bamfiltertech
g++ -O3 -I../bamtools/src -I../bamtools/include/api -c bamfiltertech.cpp
bamfiltertech.cpp: In function 'int main(int, char*)':
bamfiltertech.cpp:87: error: no matching function for call to
'BamTools::BamWriter::Open(const char [7], std::string&, const
std::vector<BamTools::RefData, std::allocatorBamTools::RefData >&, bool&)'
../bamtools/include/api/BamWriter.h:50: note: candidates are: bool
BamTools::BamWriter::Open(const std::string&, const std::string&, const
BamTools::RefVector&)
../bamtools/include/api/BamWriter.h:54: note: bool
BamTools::BamWriter::Open(const std::string&, const BamTools::SamHeader&,
const BamTools::RefVector&)
make: *
* [bamfiltertech.o] Error 1


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#29

@ekg ekg closed this Oct 2, 2013
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