Join GitHub today
GitHub is home to over 28 million developers working together to host and review code, manage projects, and build software together.Sign up
Out of memory when using freebayes-parallel #312
I have a sample of 1281 BAM files that I've been trying to process though many of the threads for freebayes are getting 'killed'.
I've been calling them using freebayes-parallel over regions of 1 million.
Another thing to note is that I had to add a --gnu flag to the freebayes-parallel script to get it to work.
Thanks for the help!
It might help a lot to reduce the memory usage by merging the BAM files
On Thu, Aug 18, 2016, 20:17 jwickes email@example.com wrote: