guix genomics packages
This repo contains guix package definitions (aka guile build scripts) for bioinformatics tools that I author and deploy.
To install packages from these definitions, specify the path of this repository as your
For instance, to install
wfmash from within this repository directory:
GUIX_PACKAGE_PATH=. guix package -i wfmash
If the guix-genomics repository directory were in your home directory, you might do this:
GUIX_PACKAGE_PATH=~/guix-genomics guix package -i wfmash
You do this to tell where guix to look for additional package specifications. These specifications live in the scheme definitions in this repository.
To build and update a package, first change the commit id and/or version in its .scm file and then run:
tool=tool_name; GUIX_PACKAGE_PATH=. guix build $tool && GUIX_PACKAGE_PATH=. guix package -i $tool && git commit -a -m 'update '$tool && git push origin master ``