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Maximum Likelihood Network Orientation (MLNO) Study

Case Study

Model Data Sets

This directory contains the scripts used to compute the f-statistics implied by the demographic models from our case study as well as seven prior studies. It also contains the f-statistic data sets and pictures of the graph topologies.

Simulated Data Sets

This directory contains the scripts used to simulate data sets for benchmarking TreeMix and TreeMix-MLNO. It also contains the sample covariance matrix, the f2-statistic matrix, and the standard error for the entries of these matrices for all model conditions evaluated in the simulation study.

TreeMix and TreeMix-MLNO

MiqoGraph

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