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sudo: false | |
language: python | |
python: | |
- "3.6" | |
# Setup anaconda | |
install: | |
# We do this conditionally because it saves us some downloading if the | |
# version is the same. | |
- wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh | |
- bash miniconda.sh -b -p $HOME/miniconda | |
- export PATH="$HOME/miniconda/bin:$PATH" | |
- hash -r | |
- conda config --set always_yes yes --set changeps1 no | |
- conda update -q conda | |
# Useful for debugging any issues with conda | |
- conda info -a | |
# Create conda environment | |
- conda env create -f ./environment.yml | |
- source activate elegant | |
# Download data | |
- wget -P data http://hgdownload.cse.ucsc.edu/goldenPath/dm6/bigZips/dm6.fa.gz | |
- gzip -dc data/dm6.fa.gz > data/dm6.fa | |
# Create html and ipynb dirs (make doesn't do this automaticallly when making individual chapters first) | |
- mkdir html | |
- mkdir ipynb | |
# command to run tests | |
script: | |
- make html/preface.html | |
- make html/ch1.html | |
- make html/ch2.html | |
- make html/ch3.html | |
- make html/ch4.html | |
- make html/ch5.html | |
- make html/ch6.html | |
- make html/ch7.html | |
- make html/ch8.html | |
- make html/epilogue.html | |
- make exercises | |
- make all | |
- make zip |