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sudo: false
language: python
python:
- "3.6"
# Setup anaconda
install:
# We do this conditionally because it saves us some downloading if the
# version is the same.
- wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
- bash miniconda.sh -b -p $HOME/miniconda
- export PATH="$HOME/miniconda/bin:$PATH"
- hash -r
- conda config --set always_yes yes --set changeps1 no
- conda update -q conda
# Useful for debugging any issues with conda
- conda info -a
# Create conda environment
- conda env create -f ./environment.yml
- source activate elegant
# Download data
- wget -P data http://hgdownload.cse.ucsc.edu/goldenPath/dm6/bigZips/dm6.fa.gz
- gzip -dc data/dm6.fa.gz > data/dm6.fa
# Create html and ipynb dirs (make doesn't do this automaticallly when making individual chapters first)
- mkdir html
- mkdir ipynb
# command to run tests
script:
- make html/preface.html
- make html/ch1.html
- make html/ch2.html
- make html/ch3.html
- make html/ch4.html
- make html/ch5.html
- make html/ch6.html
- make html/ch7.html
- make html/ch8.html
- make html/epilogue.html
- make exercises
- make all
- make zip