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| sudo: false | |
| language: python | |
| python: | |
| - "3.6" | |
| # Setup anaconda | |
| install: | |
| # We do this conditionally because it saves us some downloading if the | |
| # version is the same. | |
| - wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh | |
| - bash miniconda.sh -b -p $HOME/miniconda | |
| - export PATH="$HOME/miniconda/bin:$PATH" | |
| - hash -r | |
| - conda config --set always_yes yes --set changeps1 no | |
| - conda update -q conda | |
| # Useful for debugging any issues with conda | |
| - conda info -a | |
| # Create conda environment | |
| - conda env create -f ./environment.yml | |
| - source activate elegant | |
| # Download data | |
| - wget -P data http://hgdownload.cse.ucsc.edu/goldenPath/dm6/bigZips/dm6.fa.gz | |
| - gzip -dc data/dm6.fa.gz > data/dm6.fa | |
| # Create html and ipynb dirs (make doesn't do this automaticallly when making individual chapters first) | |
| - mkdir html | |
| - mkdir ipynb | |
| # command to run tests | |
| script: | |
| - make html/preface.html | |
| - make html/ch1.html | |
| - make html/ch2.html | |
| - make html/ch3.html | |
| - make html/ch4.html | |
| - make html/ch5.html | |
| - make html/ch6.html | |
| - make html/ch7.html | |
| - make html/ch8.html | |
| - make html/epilogue.html | |
| - make exercises | |
| - make all | |
| - make zip |