GitHub is home to over 28 million developers working together. Join them to grow your own development teams, manage permissions, and collaborate on projects.
Matlab scripts released with the 2018 eLife manuscript by Tastekin, Khandelwal et al. (Louis lab)
Machine learning analysis of Hydra behavior
Clathrin coat controls vesicle acidification by blocking vacuolar ATPase activity. Zohreh Farsi1,5, Sindhuja Gowrisankaran2, Matija Krunic2, Burkhard Rammner3, Dietmar Riedel4, Andrew Woehler5, Carsten Mim6, Reinhard Jahn1, Ira Milosevic2
MCMC method for estimating geCAI codon weights from CDS and mRNA abundance data
Monte Carlo simulation for comparing genomic peak files
Calls peaks and genes from CATaDa data from Drosophila
Pipeline to process DamID material and output Dam-only data files for profiling chromatin accessibility. This script is the pipeline generated by Owen Marshall (https://github.com/owenjm/damidseq_pipeline) with some minor modifications.
clean analysis of infections with "pure" influenza virus sequenced on 10X Chromium
Simulation model for growing phages on bacterial lawn
Python functions for analysis of the overt covert project
MDToolbox: A MATLAB/Octave toolbox for statistical analysis of molecular dynamics trajectories
Software for cryo-EM structural analysis of helical filaments
Code accompanying White et al. 2017
CaCLEAN restores the Ca2+ release maps (or active CRUs) in beating cardiomyocytes.
python package for ephys and calcium imaging IO and analysis
(Arbo)virus (We)ather (D)riven (D)ynamics R-package development repo
Code to determine phase onset times for the drosophila behavioral sequence: pupal ecdysis.
Source code for Hueschen, Kenny, Xu, Dumont, "NuMA Recruits Dynein Activity to Microtubule Minus-Ends at Mitosis," 2017.
Codes and figure data used for "Bright multicolor labeling of neuronal circuits with fluorescent proteins and chemical tags" by Sakaguchi et al 2018
Simulation and analysis code for Lindsay and Miller 2018