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ERK ancestral reconstruction
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README.md

ERK2 Folding@home simulations

This site archives trajectory data, scripts, and supplementary figures for the following publication:

Dajun Sang, Sudarshan Pinglay, Rafal P. Wiewiora, Myvizhi Esai Selvan, Hua Jane Lou, John D. Chodera, Benjamin Turk, Zeynep H. Gümüş and Liam J. Holt, "Ancestral reconstruction reveals mechanisms of ERK regulatory evolution". eLife, 2019. http://dx.doi.org/10.7554/eLife.38805

Complete Folding@home simulation data analyzed for this publication is available via the Open Science Framework.

License

  • The software in this repository is made available under the MIT License - a copy of this license is provided as SOFTWARE_LICENSE
  • The data in this repository is made available under the CC BY 4.0 License - a copy of this license is provided as DATA_LICENSE

Manifest

The repo cointains all of the scripts and jupyter notebooks used to set up and process the simulation data, as well as most numpy data arrays calculated from the original trajectories (subject to Github's file size restrictions). Materials are split into two independent directories containing different types of analyses.

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