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This repository contains scripts that were used during my use of Illumina sequencing to determine mutation rates.

Apache-2.0 license

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Name		Name	Last commit message	Last commit date
Latest commit History 7 Commits
LICENSE		LICENSE
Mutcount_analysis.R		Mutcount_analysis.R
PrimerID_analysis_workflow.doc		PrimerID_analysis_workflow.doc
README.md		README.md
Stop_codon_script_v6.R		Stop_codon_script_v6.R
counts.py		counts.py

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This code is associated with the paper from Pauly et al., "A novel twelve class fluctuation test reveals higher than expected mutation rates for influenza A viruses". eLife, 2017. http://dx.doi.org/10.7554/eLife.26437

NGS_mutation_rate_assay

This repository contains scripts that were used during my use of Illumina sequencing to determine mutation rates.

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This repository contains scripts that were used during my use of Illumina sequencing to determine mutation rates.

Apache-2.0 license

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Python 19.4%