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| <?xml version="1.0" encoding="UTF-8"?><!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD v1.1d1 20130915//EN" "JATS-archivearticle1.dtd"><article article-type="research-article" dtd-version="1.1d1" xmlns:xlink="http://www.w3.org/1999/xlink"><front><journal-meta><journal-id journal-id-type="nlm-ta">eLife</journal-id><journal-id journal-id-type="hwp">elife</journal-id><journal-id journal-id-type="publisher-id">eLife</journal-id><journal-title-group><journal-title>eLife</journal-title></journal-title-group><issn publication-format="electronic">2050-084X</issn><publisher><publisher-name>eLife Sciences Publications, Ltd</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">00049</article-id><article-id pub-id-type="doi">10.7554/eLife.00049</article-id><article-categories><subj-group subj-group-type="display-channel"><subject>Research article</subject></subj-group><subj-group subj-group-type="heading"><subject>Biochemistry</subject></subj-group><subj-group subj-group-type="heading"><subject>Microbiology and infectious disease</subject></subj-group></article-categories><title-group><article-title>Sodium taurocholate cotransporting polypeptide is a functional receptor for human hepatitis B and D virus</article-title></title-group><contrib-group><contrib contrib-type="author" equal-contrib="yes" id="author-1539"><name><surname>Yan</surname><given-names>Huan</given-names></name><xref ref-type="aff" rid="aff1"/><xref ref-type="aff" rid="aff2"/><xref ref-type="fn" rid="equal-contrib">†</xref><xref ref-type="other" rid="par-1"/><xref ref-type="other" rid="par-2"/><xref ref-type="other" rid="par-3"/><xref ref-type="fn" rid="conf1"/><xref ref-type="fn" rid="con1"/></contrib><contrib contrib-type="author" equal-contrib="yes" id="author-1540"><name><surname>Zhong</surname><given-names>Guocai</given-names></name><xref ref-type="aff" rid="aff2"/><xref ref-type="fn" rid="equal-contrib">†</xref><xref ref-type="other" rid="par-1"/><xref ref-type="other" rid="par-2"/><xref ref-type="other" rid="par-3"/><xref ref-type="fn" rid="conf1"/><xref ref-type="fn" rid="con2"/></contrib><contrib contrib-type="author" id="author-1541"><name><surname>Xu</surname><given-names>Guangwei</given-names></name><xref ref-type="aff" rid="aff2"/><xref ref-type="other" rid="par-2"/><xref ref-type="other" rid="par-3"/><xref ref-type="fn" rid="conf1"/><xref ref-type="other" rid="dataro1"/><xref ref-type="fn" rid="con3"/></contrib><contrib contrib-type="author" id="author-1542"><name><surname>He</surname><given-names>Wenhui</given-names></name><xref ref-type="aff" rid="aff2"/><xref ref-type="aff" rid="aff3"/><xref ref-type="other" rid="par-2"/><xref ref-type="other" rid="par-3"/><xref ref-type="fn" rid="conf1"/><xref ref-type="other" rid="dataro1"/><xref ref-type="fn" rid="con4"/></contrib><contrib contrib-type="author" id="author-1559"><name><surname>Jing</surname><given-names>Zhiyi</given-names></name><xref ref-type="aff" rid="aff2"/><xref ref-type="other" rid="par-2"/><xref ref-type="other" rid="par-3"/><xref ref-type="fn" rid="conf1"/><xref ref-type="other" rid="dataro1"/><xref ref-type="fn" rid="con5"/></contrib><contrib contrib-type="author" id="author-1560"><name><surname>Gao</surname><given-names>Zhenchao</given-names></name><xref ref-type="aff" rid="aff1"/><xref ref-type="aff" rid="aff2"/><xref ref-type="other" rid="par-2"/><xref ref-type="other" rid="par-3"/><xref ref-type="fn" rid="conf1"/><xref ref-type="other" rid="dataro1"/><xref ref-type="fn" rid="con6"/></contrib><contrib contrib-type="author" id="author-1561"><name><surname>Huang</surname><given-names>Yi</given-names></name><xref ref-type="aff" rid="aff2"/><xref ref-type="aff" rid="aff3"/><xref ref-type="other" rid="par-2"/><xref ref-type="other" rid="par-3"/><xref ref-type="fn" rid="conf1"/><xref ref-type="fn" rid="con7"/></contrib><contrib contrib-type="author" id="author-1562"><name><surname>Qi</surname><given-names>Yonghe</given-names></name><xref ref-type="aff" rid="aff2"/><xref ref-type="other" rid="par-2"/><xref ref-type="other" rid="par-3"/><xref ref-type="fn" rid="conf1"/><xref ref-type="fn" rid="con8"/></contrib><contrib contrib-type="author" id="author-1563"><name><surname>Peng</surname><given-names>Bo</given-names></name><xref ref-type="aff" rid="aff2"/><xref ref-type="other" rid="par-2"/><xref ref-type="other" rid="par-3"/><xref ref-type="fn" rid="conf1"/><xref ref-type="fn" rid="con9"/></contrib><contrib contrib-type="author" id="author-1564"><name><surname>Wang</surname><given-names>Haimin</given-names></name><xref ref-type="aff" rid="aff2"/><xref ref-type="other" rid="par-2"/><xref ref-type="other" rid="par-3"/><xref ref-type="fn" rid="conf1"/><xref ref-type="fn" rid="con10"/></contrib><contrib contrib-type="author" id="author-1565"><name><surname>Fu</surname><given-names>Liran</given-names></name><xref ref-type="aff" rid="aff2"/><xref ref-type="aff" rid="aff3"/><xref ref-type="other" rid="par-2"/><xref ref-type="other" rid="par-3"/><xref ref-type="fn" rid="conf1"/><xref ref-type="fn" rid="con11"/></contrib><contrib contrib-type="author" id="author-1566"><name><surname>Song</surname><given-names>Mei</given-names></name><xref ref-type="aff" rid="aff2"/><xref ref-type="aff" rid="aff3"/><xref ref-type="other" rid="par-2"/><xref ref-type="other" rid="par-3"/><xref ref-type="fn" rid="conf1"/><xref ref-type="fn" rid="con12"/></contrib><contrib contrib-type="author" id="author-1567"><name><surname>Chen</surname><given-names>Pan</given-names></name><xref ref-type="aff" rid="aff2"/><xref ref-type="aff" rid="aff3"/><xref ref-type="other" rid="par-1"/><xref ref-type="other" rid="par-2"/><xref ref-type="other" rid="par-3"/><xref ref-type="fn" rid="conf1"/><xref ref-type="fn" rid="con13"/></contrib><contrib contrib-type="author" id="author-1568"><name><surname>Gao</surname><given-names>Wenqing</given-names></name><xref ref-type="aff" rid="aff2"/><xref ref-type="other" rid="par-2"/><xref ref-type="other" rid="par-3"/><xref ref-type="fn" rid="conf1"/><xref ref-type="fn" rid="con14"/></contrib><contrib contrib-type="author" id="author-1569"><name><surname>Ren</surname><given-names>Bijie</given-names></name><xref ref-type="aff" rid="aff2"/><xref ref-type="other" rid="par-2"/><xref ref-type="other" rid="par-3"/><xref ref-type="fn" rid="conf1"/><xref ref-type="fn" rid="con15"/></contrib><contrib contrib-type="author" id="author-1570"><name><surname>Sun</surname><given-names>Yinyan</given-names></name><xref ref-type="aff" rid="aff2"/><xref ref-type="other" rid="par-1"/><xref ref-type="other" rid="par-2"/><xref ref-type="other" rid="par-3"/><xref ref-type="fn" rid="conf1"/><xref ref-type="fn" rid="con16"/></contrib><contrib contrib-type="author" id="author-1571"><name><surname>Cai</surname><given-names>Tao</given-names></name><xref ref-type="aff" rid="aff2"/><xref ref-type="other" rid="par-2"/><xref ref-type="other" rid="par-3"/><xref ref-type="fn" rid="conf1"/><xref ref-type="other" rid="dataro1"/><xref ref-type="fn" rid="con17"/></contrib><contrib contrib-type="author" id="author-1572"><name><surname>Feng</surname><given-names>Xiaofeng</given-names></name><xref ref-type="aff" rid="aff2"/><xref ref-type="other" rid="par-2"/><xref ref-type="other" rid="par-3"/><xref ref-type="fn" rid="conf1"/><xref ref-type="fn" rid="con18"/></contrib><contrib contrib-type="author" id="author-1573"><name><surname>Sui</surname><given-names>Jianhua</given-names></name><xref ref-type="aff" rid="aff2"/><xref ref-type="other" rid="par-2"/><xref ref-type="other" rid="par-3"/><xref ref-type="fn" rid="conf1"/><xref ref-type="fn" rid="con19"/></contrib><contrib contrib-type="author" corresp="yes" id="author-1309"><name><surname>Li</surname><given-names>Wenhui</given-names></name><xref ref-type="aff" rid="aff2"/><xref ref-type="corresp" rid="cor1">*</xref><xref ref-type="other" rid="par-1"/><xref ref-type="other" rid="par-2"/><xref ref-type="other" rid="par-3"/><xref ref-type="fn" rid="conf1"/><xref ref-type="other" rid="dataro1"/><xref ref-type="fn" rid="con20"/></contrib><aff id="aff1"><institution content-type="dept">Graduate program in School of Life Sciences</institution>, <institution>Peking University</institution>, <addr-line><named-content content-type="city">Beijing</named-content></addr-line>, <country>China</country></aff><aff id="aff2"><institution>National Institute of Biological Sciences</institution>, <addr-line><named-content content-type="city">Beijing</named-content></addr-line>, <country>China</country></aff><aff id="aff3"><institution>Graduate program in Chinese Academy of Medical Sciences and Peking Union Medical College</institution>, <addr-line><named-content content-type="city">Beijing</named-content></addr-line>, <country>China</country></aff></contrib-group><contrib-group content-type="section"><contrib contrib-type="editor"><name><surname>Chen</surname><given-names>Zhijian J</given-names></name><role>Reviewing editor</role><aff><institution>UT Southwestern Medical School</institution>, <country>United States</country></aff></contrib></contrib-group><author-notes><corresp id="cor1"><label>*</label>For correspondence: <email>liwenhui@nibs.ac.cn</email></corresp><fn fn-type="con" id="equal-contrib"><label>†</label><p>These authors contributed equally to this work</p></fn></author-notes><pub-date date-type="pub" publication-format="electronic"><day>13</day><month>11</month><year>2012</year></pub-date><pub-date pub-type="collection"><year>2012</year></pub-date><volume>1</volume><elocation-id>e00049</elocation-id><history><date date-type="received"><day>11</day><month>07</month><year>2012</year></date><date date-type="accepted"><day>05</day><month>09</month><year>2012</year></date></history><permissions><copyright-statement>© 2012, Yan et al</copyright-statement><copyright-year>2012</copyright-year><copyright-holder>Yan et al</copyright-holder><license xlink:href="http://creativecommons.org/licenses/by/3.0/"><license-p>This article is distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">Creative Commons Attribution License</ext-link>, which permits unrestricted use and redistribution provided that the original author and source are credited.</license-p></license></permissions><self-uri content-type="pdf" xlink:href="elife00049.pdf"/><related-article ext-link-type="doi" id="ra1" related-article-type="commentary" xlink:href="10.7554/eLife.00301"/><abstract><object-id pub-id-type="doi">10.7554/eLife.00049.001</object-id><p>Human hepatitis B virus (HBV) infection and HBV-related diseases remain a major public health problem. Individuals coinfected with its satellite hepatitis D virus (HDV) have more severe disease. Cellular entry of both viruses is mediated by HBV envelope proteins. The pre-S1 domain of the large envelope protein is a key determinant for receptor(s) binding. However, the identity of the receptor(s) is unknown. Here, by using near zero distance photo-cross-linking and tandem affinity purification, we revealed that the receptor-binding region of pre-S1 specifically interacts with sodium taurocholate cotransporting polypeptide (NTCP), a multiple transmembrane transporter predominantly expressed in the liver. Silencing NTCP inhibited HBV and HDV infection, while exogenous NTCP expression rendered nonsusceptible hepatocarcinoma cells susceptible to these viral infections. Moreover, replacing amino acids 157–165 of nonfunctional monkey NTCP with the human counterpart conferred its ability in supporting both viral infections. Our results demonstrate that NTCP is a functional receptor for HBV and HDV.</p><p><bold>DOI:</bold> <ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.001">http://dx.doi.org/10.7554/eLife.00049.001</ext-link></p></abstract><abstract abstract-type="executive-summary"><object-id pub-id-type="doi">10.7554/eLife.00049.002</object-id><title>eLife digest</title><p>Liver diseases related to the human hepatitis B virus (HBV) kill about 1 million people every year, and more than 350 million people around the world are infected with the virus. Some 15 million of these people are also infected with the hepatitis D virus (HDV), which is a satellite virus of HBV, and this places them at an even higher risk of liver diseases, including cancer. The viruses are known to enter liver cells by binding to receptors on their surface before being engulfed.</p><p>Both HBV and HDV have outer coats that consist of three kinds of envelope proteins, and a region called the pre-S1 domain in one of them is known to have a central role in the interaction between the viruses and the receptors and, therefore, in infecting the cells. However, the identity of the HBV receptor has remained a mystery. Now Yan et al. have identified this receptor to be sodium taurocholate cotransporting polypeptide. This protein, known as NTCP for short, is normally involved in the circulation of bile acids in the body.</p><p>In addition to humans, only two species are known to be susceptible to infection by human HBV and HDV—chimpanzees and a small mammal known as the treeshrew. Yan et al. started by isolating primary liver cells from treeshrews, and then used a combination of advanced purification and mass spectrometry analysis to show that the NTCP on the surface of the cells interacts with the pre-S1 domain in HBV.</p><p>The authors then performed a series of gene knockdown experiments on liver cells of both human and treeshrew origin: when the gene that codes for NTCP was silenced, HBV infection was greatly reduced. Moreover, they were able to transfect HepG2 cells—which are widely used in research into liver disease, but are not susceptible to HBV and HDV infection—with NTCP from humans and treeshrews to make them susceptible. Similarly, although monkeys are not susceptible to HBV, replacing just five amino acids in monkey NTCP with their human counterparts was enough to make the monkey NTCP a functional receptor for the viruses.</p><p>In the past, basic research into HBV and the development of antiviral therapeutics have both been hindered by the lack of suitable in vitro infection systems and animal models. Now, the work of Yan et al. means that it will be possible to use NTCP-complemented HepG2 cells for challenges as diverse as fundamental studies of basic viral entry/replication mechanisms and large-scale drug screening. It is also possible that HBV and HDV infection might interfere with some of the important physiological functions carried out by NTCP, so the latest work could also be of interest to medical scientists working on other diseases related to these infections.</p><p><bold>DOI:</bold> <ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.002">http://dx.doi.org/10.7554/eLife.00049.002</ext-link></p></abstract><kwd-group kwd-group-type="author-keywords"><title>Author keywords</title><kwd>Sodium taurocholate cotransporting polypeptide</kwd><kwd>receptor</kwd><kwd>hepatitis B virus</kwd><kwd>hepatitis D virus</kwd><kwd>liver</kwd><kwd>virus infection</kwd></kwd-group><kwd-group kwd-group-type="research-organism"><title>Research organism</title><kwd>Viruses</kwd><kwd>Other</kwd></kwd-group><funding-group><award-group id="par-1"><funding-source><institution-wrap><institution>The Ministry of Science and Technology of the People's Republic of China</institution></institution-wrap></funding-source><award-id>2010CB530101</award-id><principal-award-recipient><name><surname>Yan</surname><given-names>Huan</given-names></name><name><surname>Zhong</surname><given-names>Guocai</given-names></name><name><surname>Chen</surname><given-names>Pan</given-names></name><name><surname>Sun</surname><given-names>Yinyan</given-names></name><name><surname>Li</surname><given-names>Wenhui</given-names></name></principal-award-recipient></award-group><award-group id="par-2"><funding-source><institution-wrap><institution>Science and Technology Bureau of Beijing Municipal Government</institution></institution-wrap></funding-source><principal-award-recipient><name><surname>Yan</surname><given-names>Huan</given-names></name><name><surname>Zhong</surname><given-names>Guocai</given-names></name><name><surname>Xu</surname><given-names>Guangwei</given-names></name><name><surname>He</surname><given-names>Wenhui</given-names></name><name><surname>Jing</surname><given-names>Zhiyi</given-names></name><name><surname>Gao</surname><given-names>Zhenchao</given-names></name><name><surname>Huang</surname><given-names>Yi</given-names></name><name><surname>Qi</surname><given-names>Yonghe</given-names></name><name><surname>Peng</surname><given-names>Bo</given-names></name><name><surname>Wang</surname><given-names>Haimin</given-names></name><name><surname>Fu</surname><given-names>Liran</given-names></name><name><surname>Song</surname><given-names>Mei</given-names></name><name><surname>Chen</surname><given-names>Pan</given-names></name><name><surname>Gao</surname><given-names>Wenqing</given-names></name><name><surname>Ren</surname><given-names>Bijie</given-names></name><name><surname>Sun</surname><given-names>Yinyan</given-names></name><name><surname>Cai</surname><given-names>Tao</given-names></name><name><surname>Feng</surname><given-names>Xiaofeng</given-names></name><name><surname>Sui</surname><given-names>Jianhua</given-names></name><name><surname>Li</surname><given-names>Wenhui</given-names></name></principal-award-recipient></award-group><award-group id="par-3"><funding-source><institution-wrap><institution>The Ministry of Science and Technology of the People's Republic of China</institution></institution-wrap></funding-source><award-id>2011CB812501</award-id><principal-award-recipient><name><surname>Yan</surname><given-names>Huan</given-names></name><name><surname>Zhong</surname><given-names>Guocai</given-names></name><name><surname>Xu</surname><given-names>Guangwei</given-names></name><name><surname>He</surname><given-names>Wenhui</given-names></name><name><surname>Jing</surname><given-names>Zhiyi</given-names></name><name><surname>Gao</surname><given-names>Zhenchao</given-names></name><name><surname>Huang</surname><given-names>Yi</given-names></name><name><surname>Qi</surname><given-names>Yonghe</given-names></name><name><surname>Peng</surname><given-names>Bo</given-names></name><name><surname>Wang</surname><given-names>Haimin</given-names></name><name><surname>Fu</surname><given-names>Liran</given-names></name><name><surname>Song</surname><given-names>Mei</given-names></name><name><surname>Chen</surname><given-names>Pan</given-names></name><name><surname>Gao</surname><given-names>Wenqing</given-names></name><name><surname>Ren</surname><given-names>Bijie</given-names></name><name><surname>Sun</surname><given-names>Yinyan</given-names></name><name><surname>Cai</surname><given-names>Tao</given-names></name><name><surname>Feng</surname><given-names>Xiaofeng</given-names></name><name><surname>Sui</surname><given-names>Jianhua</given-names></name><name><surname>Li</surname><given-names>Wenhui</given-names></name></principal-award-recipient></award-group><funding-statement>The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.</funding-statement></funding-group><custom-meta-group><custom-meta><meta-name>elife-xml-version</meta-name><meta-value>2</meta-value></custom-meta><custom-meta specific-use="meta-only"><meta-name>Author impact statement</meta-name><meta-value>Biochemical and genetic tests have revealed that a liver protein called NTCP is a functional receptor for hepatitis B and D viruses, which should lead to an improved understanding of the infections caused by these viruses and assist the development of new intervention strategies.</meta-value></custom-meta></custom-meta-group></article-meta></front><body><sec id="s1" sec-type="intro"><title>Introduction</title><p>Approximately 2 billion people have been infected with human hepatitis B virus (HBV) worldwide. Over 350 million people currently are chronically infected and are at high risk for progression to cirrhosis, liver failure, or cancer. More than 50% of liver cancers worldwide are attributed to HBV infection. HBV-related liver diseases remain a major public health problem, causing approximately 1 million deaths per year. Individuals coinfected with HBV and HDV are at greater risk for rapid progression and severe disease (<xref ref-type="bibr" rid="bib28">Lavanchy, 2004</xref>; <xref ref-type="bibr" rid="bib26">Hughes et al., 2011</xref>). Despite its enormous medical and social relevance, progress in HBV research has been impeded by the lack of understanding of HBV entry by which the virus specifically infects human liver cells. HBV is an enveloped virus containing a small genome of 3.2 kb of partially double-stranded DNA encoding four overlapping reading frames. The HBV envelope consists of the small (S), middle (M), and large (L) envelope proteins, which are multiple transmembrane spanners sharing the same C-terminal domain corresponding to the S protein but differing at their N-terminal domains (<xref ref-type="fig" rid="fig1">Figure 1A</xref>) (<xref ref-type="bibr" rid="bib24">Heermann et al., 1984</xref>; <xref ref-type="bibr" rid="bib40">Seeger et al., 2007</xref>). HDV is a small satellite RNA virus of HBV carrying all three HBV envelope proteins and can only propagate when coexisting with HBV. The mechanism of viral entry of HDV is believed to be similar to that of HBV, and HDV has been used as a surrogate for studying HBV infection at the entry level (<xref ref-type="bibr" rid="bib1">Barrera et al., 2004</xref>; <xref ref-type="bibr" rid="bib50">Sureau, 2006</xref>; <xref ref-type="bibr" rid="bib26">Hughes et al., 2011</xref>). The L protein and integrity of S protein are critical for HBV and HDV infections. The pre-S1 domain of the L protein is a key determinant for entry of both HBV and HDV and is believed to mediate viral interaction with the cellular receptor(s) on hepatocytes (<xref ref-type="bibr" rid="bib20">Gripon et al., 1995</xref>; <xref ref-type="bibr" rid="bib30">Le Seyec et al., 1999</xref>; <xref ref-type="bibr" rid="bib10">Chouteau et al., 2001</xref>; <xref ref-type="bibr" rid="bib4">Blanchet and Sureau, 2007</xref>; <xref ref-type="bibr" rid="bib29">Le Duff et al., 2009</xref>). Although a number of HBV receptor candidates have been reported in the past, none has been confirmed to be functional in supporting viral infection (<xref ref-type="bibr" rid="bib15">Glebe and Urban, 2007</xref>).<fig id="fig1" position="float"><object-id pub-id-type="doi">10.7554/eLife.00049.003</object-id><label>Figure 1.</label><caption><title>Developing photoreactive peptide ligands and an antibody for identifying pre-S1 binding partner(s) by zero distance cross-linking.</title><p>(<bold>A</bold>) Schematic diagram of HBV envelope proteins and N-terminal peptides of pre-S1 domain. Pre-S1 (2-47): 2-47<sup>th</sup> residues of the pre-S1 domain of the L protein of HBV (S472 strain, genotype C). Residue numbering is based on genotype D. Asterisk indicates highly conserved residues among genotypes. Epitope of mAb 2D3 was shaded in gray. (<bold>B</bold>) Effect of alterations of the critical N-terminal residues within pre-S1 region of L protein on HDV binding to PTHs. Both wild-type (WT) and mutant HDV virions carry HBV envelope proteins. Mutant HDV carries point mutation as indicated in the pre-S1 region of L protein. PTHs were incubated with HDV at 16°C for 4 hr and followed by extensive wash; bound virions were quantified by qRT-PCR for virus genome RNA copy, and the data are presented as percentage of virus binding, the binding of WT virus was set as 100%. (<bold>C</bold>) Myr-47/WT<sub>b</sub> bait peptide dose-dependently inhibited HDV virion binding. The binding assay was performed similarly as panel B except that PTHs were pre-incubated with indicated peptides. (<bold>D</bold>) Inhibition of viral infection by the photoreactive peptides. Left: PTHs were pre-incubated with peptides at indicated concentrations at 37°C for 1 hr and then inoculated with HDV virus. Viral infection was examined by measuring viral RNA in infected cells with qRT-PCR 6 days post-infection (dpi). Data are presented as percentage HDV infection. Right: peptides at indicated concentrations were added to PTHs before HBV inoculation. The cell culture medium was replenished every 2 days. Secreted viral antigen HBeAg was measured by ELISA on 6 dpi, and the data are presented as percentage of that in the absence of peptides. (<bold>E</bold>) Antibody 2D3 recognizes residues 19–33 of pre-S1. Peptide NC36 (aa 4–36 of pre-S1, NLSVPNPLGFFPDHQLDPAFGANSNNPDWDFNP) conjugated with keyhole limpet hemocyanin (KLH) was the immunogen peptide for generating mouse mAb 2D3. Binding activity of 2D3 with full-length pre-S1 protein was measured by ELISA in the presence of competition peptides at indicated concentrations. LD15 peptide compassing residues 19–33 of pre-S1 inhibited 2D3 binding in a dose-dependent manner, indicating that 2D3 recognizes an epitope within this region. HBV: hepatitis B virus; mAb: monoclonal antibody; HDV: hepatitis D virus; PTH: primary <italic>Tupaia</italic> hepatocytes; HBeAg: HBV e antigen.</p><p><bold>DOI:</bold> <ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.003">http://dx.doi.org/10.7554/eLife.00049.003</ext-link></p></caption><graphic xlink:href="elife00049f001"/></fig></p><p>An N-terminal myristoylated peptide corresponding to amino acids (aa) 2–48 of the pre-S1 domain of the L protein has been shown to effectively block both HBV and HDV infections of hepatocytes through engaging an unknown cellular component, most likely a viral receptor (<xref ref-type="bibr" rid="bib2">Barrera et al., 2005</xref>; <xref ref-type="bibr" rid="bib14">Glebe et al., 2005</xref>; <xref ref-type="bibr" rid="bib21">Gripon et al., 2005</xref>; <xref ref-type="bibr" rid="bib11">Engelke et al., 2006</xref>; <xref ref-type="bibr" rid="bib39">Schulze et al., 2010</xref>). In the current study, by using a synthetic modified peptide originating from the native aa 2–48 lipopeptide (Myr-47/WT) as a probe and employing a series of biochemical approaches and virological assays, we identified and confirmed that sodium taurocholate cotransporting polypeptide (NTCP), a multiple transmembrane transporter mainly expressed in the liver, interacts specifically with the L proteins of HBV and HDV and functions as a common receptor for both viruses.</p></sec><sec id="s2" sec-type="results"><title>Results</title><sec id="s2-1"><title>Photoreactive ligand peptides for identification of interacting protein(s) of pre-S1 domain of L envelope protein</title><p>To identify the pre-S1 interacting molecule(s), we employed a photo-cross-linking approach using a synthetic peptide derived from the native pre-S1 peptide with particular residues replaced by nonnatural amino acids (L-photo-leucine, <italic>L-2-amino-4,4-azi-pentanoic acid</italic>) (<xref ref-type="fig" rid="fig1">Figure 1A</xref>). L-photo-leucine contains a photoactivatable diazirine ring. Irradiation of ultraviolet (UV) light at 365 nm induces a loss of nitrogen of the diazirine ring and yields a reactive carbene group with short half-life for covalent cross-linking at nearly zero distance (<xref ref-type="bibr" rid="bib46">Suchanek et al., 2005</xref>). Primary hepatocytes isolated from treeshrews (<italic>Tupaia belangeri</italic>), the only species susceptible to human HBV infection other than humans and chimpanzees (<xref ref-type="bibr" rid="bib45">Su et al., 1987</xref>; <xref ref-type="bibr" rid="bib52">Walter et al., 1996</xref>; <xref ref-type="bibr" rid="bib13">Glebe et al., 2003</xref>), were used as target cells. To maximize the efficiency of photo-cross-linking, two residues (leu<sub>11</sub> and phe<sub>14</sub>) in a region (aa 9–15) known to be critical for viral infection (<xref ref-type="bibr" rid="bib39">Schulze et al., 2010</xref>) were chosen for substitution with L-photo-leucine. Leu<sub>11</sub> is 100% conserved among HBV genotypes, and the 14th residue is a phenylalanine in most genotypes but a leucine in some HBV strains of genotypes F and G. Changing phe<sub>14</sub> to leucine (F14L) did not significantly affect the binding of HDV virion to primary <italic>Tupaia</italic> hepatocytes (PTHs) (<xref ref-type="fig" rid="fig1">Figure 1B</xref>). The activity of the synthesized peptide ligand Myr-47/WT<sub>b</sub> (or WT<sub>b</sub> hereafter) containing photo-leucines at positions 11 and 14 was also confirmed (<xref ref-type="fig" rid="fig1">Figure 1C,D</xref>). WT<sub>b</sub> inhibited HDV binding to PTHs with efficiency comparable to Myr-47/WT that is comprised of all natural amino acids (<xref ref-type="fig" rid="fig1">Figure 1A,C</xref>). A peptide Myr-47/N9K<sub>b</sub> (or N9K<sub>b</sub> hereafter) similar to WT<sub>b</sub> but with an additional mutation at the ninth residue (N9K) did not block HDV binding to PTHs (<xref ref-type="fig" rid="fig1">Figure 1C</xref>). WT<sub>b</sub> but not N9K<sub>b</sub> inhibited viral infection of HBV and HDV on PTHs (<xref ref-type="fig" rid="fig1">Figure 1D</xref>). Both WT<sub>b</sub> and N9K<sub>b</sub> peptides were myristoylated at the N-terminus and conjugated with a biotin tag on a C-terminal lysine residue (<xref ref-type="fig" rid="fig1">Figure 1A</xref>). N9K<sub>b</sub> differs from WT<sub>b</sub> by only one amino acid but completely lost these blocking activities. Thus, N9K<sub>b</sub> was used as a negative control for WT<sub>b</sub>. In addition, a monoclonal antibody (mAb) 2D3, which specifically recognizes an epitope adjacent to the critical receptor-binding region of the peptides and shared by both WT<sub>b</sub> and N9K<sub>b</sub>, was developed (<xref ref-type="fig" rid="fig1">Figure 1E</xref>).</p></sec><sec id="s2-2"><title>Identification of NTCP as a specific binding protein of pre-S1</title><p>The WT<sub>b</sub> or control N9K<sub>b</sub> peptide at 200 nM was then applied to PTHs in culture and near zero distance cross-linking was induced by UV irradiation. The cross-linked peptide and associated partners were precipitated by streptavidin T1 beads and separated by SDS–PAGE. Western blotting using 2D3 as a probe revealed several bands including a major smeared band with apparent molecular weight of ∼65 kDa in the WT<sub>b</sub> but not N9K<sub>b</sub> cross-linked sample. The 65-kDa band shifted to ∼43 kDa upon treatment with the deglycosylation enzyme PNGase F (<xref ref-type="fig" rid="fig2">Figure 2A</xref>, left), indicating that it is highly N-glycosylated. The WT<sub>b</sub> cross-linked protein apparently contained no intermolecular disulfide bonds as it migrated similarly under both nonreducing and reducing conditions (<xref ref-type="fig" rid="fig2">Figure 2A</xref>, right). The non-photoreactive Myr-47/WT peptide but not its N9K mutant peptide effectively competed with WT<sub>b</sub> for cross-linking to the 65-kDa band (<xref ref-type="fig" rid="fig2">Figure 2B</xref>). The cross-linked protein from PTHs decreased in abundance rapidly over time during culture (<xref ref-type="fig" rid="fig2">Figure 2C</xref>). We also examined primary human hepatocytes (PHHs) in the cross-linking experiments. Bands with slightly smaller molecular weights than those seen in the PTH cells were also observed in PHHs (<xref ref-type="fig" rid="fig2">Figure 2D</xref>).<fig-group><fig id="fig2" position="float"><object-id pub-id-type="doi">10.7554/eLife.00049.004</object-id><label>Figure 2.</label><caption><title>Identification of pre-S1 binding protein on primary hepatocytes with photoreactive peptide Myr-47/WT<sub>b</sub>.</title><p>(<bold>A</bold>) Left: Cultured PTHs at 24–48 hr after isolation and plating were photo-cross-linked with 200 nM Myr-47/WT<sub>b</sub> (WT<sub>b</sub>) or Myr-47/N9K<sub>b</sub> (N9K<sub>b</sub>), followed by Streptavidin Dynal T1 beads precipitation and Western blot analysis using mAb 2D3. The protein cross-linked by WT<sub>b</sub> is sensitive to PNGase F treatment and shifted from ∼65 to ∼43 kDa. Right: WT<sub>b</sub> cross-linked samples were treated with 100 mM DTT and/or PNGase F as indicated and detected similarly as in the left panel. (<bold>B</bold>) Non-photoreactive Myr-47/WT peptide (WT) but not its N9K mutant competed with 200 nM of WT<sub>b</sub> peptide for cross-linking with PTHs in a dose-dependent manner. (<bold>C</bold>) The abundance of the target protein(s) in PTH cells decreased over time. PTHs on different days of in vitro culturing were photo-cross-linked with 200 nM WT<sub>b</sub>. The cross-linked samples were analyzed by Western blot. The two bands at ∼65 and ∼43 kDa were due to incomplete deglycosylation by PNGase F. (<bold>D</bold>) WT<sub>b</sub> cross-linking with primary human hepatocytes (PHH). Frozen PHH cells were thawed and plated 1 day before cross-linking. With same procedure as in panel A, 200 nM WT<sub>b</sub> but not N9K<sub>b</sub> cross-linked with a glycoprotein of molecular weight at ∼60 kDa, which shifted to ∼39 kDa upon PNGase F treatment. (<bold>E</bold>) Purification of target protein(s) for MS analysis. PTHs photo-cross-linked with 200 nM of WT<sub>b</sub> or N9K<sub>b</sub> peptide were lysed, then the peptides and their cross-linked proteins were purified in tandem with Streptavidin Dynal T1 beads, mAb 2D3 conjugated beads, and Streptavidin Dynal T1 beads in 1× RIPA buffer. Extensive wash was applied for each purification step. The samples were treated with or without PNGase F as indicated prior to the last step of Streptavidin beads precipitation. The final purified samples were subjected to SDS-PAGE followed by silver staining (left). Bracketed areas indicate the bands cut for MS analysis. Western blot analysis (right) of the same cross-linked samples were performed similarly as in panel A. The top 10 nonredundant proteins identified in the 3 samples by MS analysis are listed in <xref ref-type="supplement-material" rid="SD1-data">Figure 2—Source data 1</xref>. The common protein hit identified by MS analysis of the ∼65- and ∼43-kDa bands cut from the WT<sub>b</sub> cross-linked sample was <italic>Tupaia</italic> NTCP (tsNTCP), and the representative MS/MS spectra and parameters of the peptide hits are shown in <xref ref-type="fig" rid="fig2s5">Figure 2—figure supplement 5</xref>. The control band cut from N9K<sub>b</sub> cross-linked sample did not generate any hits on any of these peptides. (<bold>F</bold>) Predicted tsNTCP protein sequence. A 30-amino acid insertion unique to tsNTCP is underlined. Two peptides identified by LC-MS/MS were highlighted in green. All lysine and arginine are highlighted in red to indicate trypsin cleavage sites. Many of the potential tryptic peptides are not appropriate for LC-MS detection because of unfavorable size and/or hydrophobicity. PTH: primary <italic>Tupaia</italic> hepatocytes; MS: mass spectrometry.</p><p><bold>DOI:</bold> <ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.004">http://dx.doi.org/10.7554/eLife.00049.004</ext-link></p><p><supplementary-material id="SD1-data"><object-id pub-id-type="doi">10.7554/eLife.00049.005</object-id><label>Figure 2—source data 1.</label><caption><title>Top 10 nonredundant proteins identified in the three samples (<xref ref-type="fig" rid="fig2">Figure 2E</xref>) by MS analysis</title><p><ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.005">http://dx.doi.org/10.7554/eLife.00049.005</ext-link></p></caption><media mime-subtype="pdf" mimetype="application" xlink:href="elife00049s001.pdf"/></supplementary-material></p></caption><graphic xlink:href="elife00049f002"/></fig><fig id="fig2s1" position="float" specific-use="child-fig"><object-id pub-id-type="doi">10.7554/eLife.00049.006</object-id><label>Figure 2—figure supplement 1.</label><caption><title>Generation of <italic>Tupaia</italic> hepatocytes proteome database from Illumina deep sequencing-determined transcriptome of PTHs.</title><p>Workflow chart of bioinformatics analysis of Illumina deep sequencing-determined transcriptome of <italic>Tupaia</italic> hepatocytes and generation of protein sequence database of PTH.</p><p><bold>DOI:</bold> <ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.006">http://dx.doi.org/10.7554/eLife.00049.006</ext-link></p></caption><graphic xlink:href="elife00049fs001"/></fig><fig id="fig2s2" position="float" specific-use="child-fig"><object-id pub-id-type="doi">10.7554/eLife.00049.007</object-id><label>Figure 2—figure supplement 2.</label><caption><title>Generation of <italic>Tupaia</italic> hepatocytes proteome database from Illumina deep sequencing-determined transcriptome of PTHs.</title><p>Statistics of outputs in generation of <italic>Tupaia</italic> hepatocytes proteome database.</p><p><bold>DOI:</bold> <ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.007">http://dx.doi.org/10.7554/eLife.00049.007</ext-link></p></caption><graphic xlink:href="elife00049fs002"/></fig><fig id="fig2s3" position="float" specific-use="child-fig"><object-id pub-id-type="doi">10.7554/eLife.00049.008</object-id><label>Figure 2—figure supplement 3.</label><caption><title>Generation of <italic>Tupaia</italic> hepatocytes proteome database from Illumina deep sequencing-determined transcriptome of PTHs.</title><p>Format of <italic>Tupaia</italic> hepatocyte proteome database. Head of <italic>Tupaia</italic> protein sequence for glyceraldehyde-3-phosphate dehydrogenase (GAPDH) in FASTA file was shown as an example. The <italic>Tupaia</italic> hepatocyte proteome database with 91,479 sequences was stored in FASTA file in a supplementary database. The FASTA sequence header lines show information about the generation procedures of these sequences and the functional annotations of their homolog(s).</p><p><bold>DOI:</bold> <ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.008">http://dx.doi.org/10.7554/eLife.00049.008</ext-link></p></caption><graphic xlink:href="elife00049fs003"/></fig><fig id="fig2s4" position="float" specific-use="child-fig"><object-id pub-id-type="doi">10.7554/eLife.00049.009</object-id><label>Figure 2—figure supplement 4.</label><caption><title>Generation of <italic>Tupaia</italic> hepatocytes proteome database from Illumina deep sequencing-determined transcriptome of PTHs.</title><p>Pie charts of genes expressed in primary hepatocytes of <italic>Tupaia</italic> and human. PANTHER database (<xref ref-type="bibr" rid="bib35">Mi et al., 2005</xref>) was used to determine the Gene Ontology (GO) biological process distribution of annotated transcripts and protein sequences of primary <italic>Tupaia</italic> hepatocytes and that of primary human hepatocytes reported by <xref ref-type="bibr" rid="bib23">Hart et al. (2010)</xref>. Major human hepatocyte protein classes are represented in the <italic>Tupaia</italic> hepatocytes proteome database generated in this study.</p><p><bold>DOI:</bold> <ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.009">http://dx.doi.org/10.7554/eLife.00049.009</ext-link></p></caption><graphic xlink:href="elife00049fs004"/></fig><fig id="fig2s5" position="float" specific-use="child-fig"><object-id pub-id-type="doi">10.7554/eLife.00049.010</object-id><label>Figure 2—figure supplement 5.</label><caption><title>Representative MS/MS spectra and parameters of the identified peptide hits.</title><p>The (<bold>A</bold>) ∼65- and (<bold>B</bold>) ∼43-kDa bands cut from the WTb cross-linked sample (<xref ref-type="fig" rid="fig2">Figure 2E</xref>, left) were analyzed by mass spectrometry. The MS/MS spectra and parameters of the NTCP peptide hits are shown.</p><p><bold>DOI:</bold> <ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.010">http://dx.doi.org/10.7554/eLife.00049.010</ext-link></p></caption><graphic xlink:href="elife00049fs005"/></fig></fig-group></p><p>We then proceeded to identify the target protein(s) using affinity purification followed by mass spectrometry (MS) analysis. The purification procedure included three tandem steps after photo-cross-linking: capturing all biotin-labeled proteins with streptavidin T1 beads, sorting out the target protein(s) with 2D3 antibody affinity beads, and then purifying with streptavidin T1 beads again to remove residual molecules that were not covalently cross-linked with the bait peptide. The purified samples were subsequently subjected to SDS-PAGE followed by silver staining. Similar to the Western blotting results with the 2D3 antibody, a ∼65-kDa protein band was visible by silver staining. The band was also shifted to ∼43 kDa upon PNGase F treatment (<xref ref-type="fig" rid="fig2">Figure 2E</xref>). Both the original 65-kDa and the shifted 43-kDa bands were subsequently excised from the gel and subjected to LTQ-Orbitrap Velos (Thermo Fisher Scientific, MA. USA) MS analysis after trypsin digestion. The tandem mass spectra were searched against a <italic>Tupaia</italic> hepatocyte protein database, which we had established by deep sequencing of the transcriptome (<xref ref-type="fig" rid="fig2s1 fig2s2 fig2s3 fig2s4">Figure 2—figure supplements 1–4</xref>). Two different tryptic peptide fragments, which were identified from both the ∼65-kDa and ∼43-kDa bands (<xref ref-type="fig" rid="fig2s5">Figure 2—figure supplement 5</xref>), matched to a protein homolog of human NTCP. <italic>Tupaia</italic> NTCP (tsNTCP) shares 83.9% protein sequence identity with its human counterpart and has an insertion of 30 aa near its C-terminus (<xref ref-type="fig" rid="fig2">Figure 2F</xref>). The peptide (TEETIPGTLG<underline>NSTH</underline>) containing 4 aa of this insertion (underlined) was one of the two peptides identified by the MS analysis at a high confidence level (<xref ref-type="fig" rid="fig2s5">Figure 2—figure supplement 5</xref>). These data suggest that NTCP is the protein specifically interacting with the WT<sub>b</sub> bait peptide.</p></sec><sec id="s2-3"><title>Confirmation of NTCP as a specific binding protein of pre-S1</title><p>We next cloned human and <italic>Tupaia</italic> <italic>NTCPs</italic> and validated the binding of the exogenously expressed NTCPs with the WT<sub>b</sub> peptide and an N-terminal myristoylated pre-S1 peptide with native residues. Both human NTCP (hNTCP) and tsNTCP could be efficiently cross-linked by WT<sub>b</sub> but not N9K<sub>b</sub> when expressed in 293T cells as shown by Western blotting with the anti-WT<sub>b</sub> antibody 2D3 as well as an anti-C9 antibody recognizing the C-terminal C9 tag of the recombinant hNTCP and tsNTCP proteins (<xref ref-type="fig" rid="fig3">Figure 3A</xref>). WT<sub>b</sub> but not the control N9K<sub>b</sub> peptide bound to 293T cells expressing a green fluorescent protein (GFP)-tagged tsNTCP (tsNTCP-EGFP) and co-localized with tsNTCP-EGFP on the cell surface. This binding was readily competed off by the free Myr-47/WT peptide (<xref ref-type="fig" rid="fig3">Figure 3B</xref>). Moreover, a native pre-S1 peptide specifically recognized the human hepatocellular carcinoma Huh-7 cell line transfected with hNTCP (<xref ref-type="fig" rid="fig3">Figure 3C</xref>). Consistently, Huh-7 cells transfected with either tsNTCP or hNTCPs had markedly increased HDV binding to the cells. The Myr-47/WT peptide readily competed with binding of the wild-type HDV, whereas a noninfectious mutant HDV virus bearing a single N9K mutation in the pre-S1 domain of its L envelope protein failed to bind either hNTCP- or tsNTCP-expressing Huh-7 cells (<xref ref-type="fig" rid="fig3">Figure 3D</xref>). Collectively, these data demonstrated a specific interaction between NTCP and the pre-S1 domain of the L protein, which directly mediates the binding of HDV virions to target cells.<fig id="fig3" position="float"><object-id pub-id-type="doi">10.7554/eLife.00049.011</object-id><label>Figure 3.</label><caption><title>Binding of NTCP with N-terminal peptide of pre-S1 and HDV virions.</title><p>(<bold>A</bold>) 293T cells transfected with an expression vector or plasmid containing cDNA of h<italic>NTCP</italic> or ts<italic>NTCP</italic> fused with a C9 tag at its C-terminus were cross-linked with 200 nM Myr-47/WT<sub>b</sub> or Myr-N9K<sub>b</sub> similarly as in <xref ref-type="fig" rid="fig2">Figure 2A</xref> at 24 hr post-transfection. Cross-linked protein samples were precipitated by Streptavidin Dynal beads followed by treatment with PNGase F as indicated, and then analyzed by Western blotting using mAb 2D3 or anti-C9 tag antibody. (<bold>B</bold>) 293T cells transfected with tsNTCP-EGFP or a control hSDC2-EGFP (encoding human heparan sulfate proteoglycan core protein fused with EGFP at C-terminus) expression plasmid were incubated with WT<sub>b</sub> or N9K<sub>b</sub> in the presence or absence of 200 nM non-photoreactive Myr-47/WT as indicated. Bound peptides were probed with PE-streptavidin and the colocalization of peptide and NTCP on cell surface was shown in the merged images. (<bold>C</bold>) FACS analysis of pre-S1 peptide binding with hNTCP transiently transfected Huh-7 cells. 24 hr post-transfection with hNTCP or a control plasmid, the cells were stained with 200 nM FITC-pre-S1 (FITC-labeled lipopeptide corresponding to the N-terminal 59-amino acid of pre-S1). The binding was analyzed by flow cytometry. (<bold>D</bold>) Huh-7 cells, after 24 hr of transfection of indicated plasmids, were incubated with wild-type HDV or HDV with a N9K mutation on its L protein. Bound virions were quantified by qRT-PCR. The result is presented as fold changes of binding over the background virus binding to pcDNA6-transfected cells. mAb: monoclonal antibody; tsNTCP: <italic>Tupaia</italic> NTCP; NTCP: sodium taurocholate cotransporting polypeptide.</p><p><ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.011">http://dx.doi.org/10.7554/eLife.00049.011</ext-link></p></caption><graphic xlink:href="elife00049f003"/></fig></p></sec><sec id="s2-4"><title>NTCP expression is required for HBV and HDV infection</title><p>To test the requirement of endogenous expression of NTCP for HBV and HDV infection, we first examined the effect of <italic>NTCP</italic> gene silencing on viral infection of PTHs. PTHs were transfected with tsNTCP-specific or a control small interfering RNA (siRNA) prior to viral inoculation. When tsNTCP mRNA level was reduced to ∼30% in tsNTCP siRNA-transfected cells (<xref ref-type="fig" rid="fig4">Figure 4A</xref>, upper-left), total HDV RNA copies were markedly reduced in these cells comparing to those transfected with control siRNA. We further quantified the HDV genome and antigenome RNA copies using strand-specific reverse transcription followed by quantitative real-time polymerase chain reaction (qPCR). The HDV antigenome is a circular replication intermediate that is complementary to the genome. It is not present in the inoculum and only appears in infected cells (<xref ref-type="bibr" rid="bib9">Chen et al., 1986</xref>). As shown in <xref ref-type="fig" rid="fig4">Figure 4A</xref> (upper-middle panel), both HDV genomic and antigenomic RNA copies were greatly reduced in cells transfected with tsNTCP-specific siRNA but not the control siRNA, indicating that tsNTCP is required for de novo HDV infection. By contrast, lenti-VSV-G virus infection, for which viral entry is mediated by glycoprotein protein G of VSV, was not affected in the tsNTCP- and siRNA-transfected cells (<xref ref-type="fig" rid="fig4">Figure 4A</xref>, upper-right). These data demonstrate that HDV viral entry requires NTCP. As HDV is enveloped by HBV envelope proteins and can only infect target cells in a single round in the absence of HBV, these data support that tsNTCP functions at entry level for viral infection mediated by HBV envelope proteins.<fig id="fig4" position="float"><object-id pub-id-type="doi">10.7554/eLife.00049.012</object-id><label>Figure 4.</label><caption><title>HDV and HBV infections of hepatocytes require NTCP.</title><p>(<bold>A</bold>) Infections of HDV and HBV in PTHs were inhibited by tsNTCP knockdown. Freshly isolated PTHs were transfected with siRNAs against tsNTCP or a control siRNA. 3 days later, 1 × 10<sup>5</sup> PTHs were inoculated with HDV, HBV, or control viruses AAV8-HBV and Lenti-VSV-G. For HDV and HBV, PTHs were infected at 500 and 100 genome equivalent copies per cell, respectively. The level of HDV viral RNAs in infected cells was quantified by qRT-PCR on 6 dpi. Strand-specific primers were used to differentiate the HDV genomic and antigenomic RNAs (see ‘Materials and methods’). For VSV-G control virus infection, recombinant lentivirus pseudotyped by VSV-G carrying a luciferase reporter was inoculated to PTHs 3 days after siRNA transfection. The luciferase activity was assessed on 6 dpi. For HBV infection, the kinetics of secreted viral antigens HBsAg and HBeAg were measured by ELISA. The medium was changed every 3 days. For AAV8-HBV infection, PTHs were infected with a recombinant AAV8 carrying 1.05× overlength HBV genome. Secreted HBeAg was assessed on indicated days post-infection. The effect of tsNTCP silencing in all viral infections was independently evaluated with a total of four siRNAs against tsNTCP (see ‘Materials and methods’). The data shown are the result of a representative siRNA out of the four tested. (<bold>B</bold>) Differentiated HepaRG cells express high level of NTCP mRNA and knockdown NTCP in these cells inhibited HDV and HBV infections. HDV and HBV infection of siRNA-transfected HepaRG cells was conducted similarly as in panel A. HDV RNA levels in the infected cells were measured on 9 dpi. For HBV infection, secreted HBeAg was collected every 2 days as indicated and analyzed by ELISA. The copy numbers of HBV total RNA and 3.5 kb RNA in the infected cells were measured at the end of the experiment, 10 dpi. (<bold>C</bold>) Knockdown hNTCP in PHHs hampered HBV infection. Frozen PHHs were thawed and plated 1 day before transfecting with siRNAs against hNTCP or a control siRNA. Similar to panels A and B, 3 days after transfection, PHHs were inoculated with 100 genome equivalent copies of HBV per cell, and the levels of secreted HBeAg were determined at indicated dpi. HBV RNAs were quantified at the end of the experiment, 9 dpi. The knockdown efficiency of siRNA targeting tsNTCP or hNTCP shown in panels A–C was determined by real time RT-PCR on day 4 after transfection. NTCP: sodium taurocholate cotransporting polypeptide; HBV: hepatitis B virus; HDV: hepatitis D virus; PTH: primary <italic>Tupaia</italic> hepatocytes; tsNTCP: <italic>Tupaia</italic> NTCP; siRNA: small interfering RNA; dpi: days post-infection; hNTCP: human NTCP.</p><p><bold>DOI:</bold> <ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.012">http://dx.doi.org/10.7554/eLife.00049.012</ext-link></p></caption><graphic xlink:href="elife00049f004"/></fig></p><p>We then tested HBV infection on tsNTCP knockdown PTHs. Infection with HBV can be assessed by measuring secreted viral antigens HBV S antigen (HBsAg) and HBV e antigen (HBeAg). HBV inocula may contain residual HBsAg that can release and interfere with the detection of newly synthesized HBsAg during the first few days of infection. To differentiate de novo HBsAg synthesis from the contaminating inoculum, we assayed HBsAg secretion over time from days 6 to 12 after infection with the culture medium changed every 2–3 days. In addition, the kinetics of production of HBeAg with minimal or no residuals in the inoculum was also examined in the same time course experiment. As shown in <xref ref-type="fig" rid="fig4">Figure 4A</xref> (lower-left), both HBsAg and HBeAg levels were markedly reduced by transfection of tsNTCP-specific but not a control siRNA at all three time points tested, demonstrating that tsNTCP expression is required for bona fide HBV infection. To confirm that tsNTCP functions at the viral entry level for HBV as it does for HDV, we tested AAV8-HBV virus infection on tsNTCP knockdown PTHs. AAV8-HBV is a recombinant adenovirus-associated virus containing a 1.05× overlength HBV genome, for which viral entry is mediated by AAV8 capsid instead of HBV envelope proteins. AAV8-HBV infection of PTHs can nevertheless transduce the HBV genome into cells and lead to subsequent HBV viral antigen expression. NTCP knockdown did not affect AAV8-HBV infection in PTHs, as shown by the kinetics of HBeAg (<xref ref-type="fig" rid="fig4">Figure 4A</xref>, lower-right). This result shows that NTCP has no effect on post-entry steps of HBV infection.</p><p>We next examined the effect of silencing human NTCP on HBV and HDV infections in human hepatocytes. Human hepatoma cell line HepaRG is the only cell line known to date to be susceptible to HBV and HDV infections upon differentiation into a mixture of hepatocyte-like and biliary-like cells (<xref ref-type="bibr" rid="bib18">Gripon et al., 2002</xref>). HepaRG differentiation requires a lengthy cell culture procedure, including maintaining undifferentiated cells for 2 weeks before induction, followed by induction with corticoids and DMSO for another 2–4 weeks (<xref ref-type="bibr" rid="bib18">Gripon et al., 2002</xref>). The NTCP mRNA level was low in HepaRG cells before induction when examined on days 5 and 10 after initial plating, but increased dramatically when the cells differentiated after induction (<xref ref-type="fig" rid="fig4">Figure 4B</xref>, upper-left). To examine if the acquired hNTCP expression on differentiated HepaRG cells is required for HDV and HBV infections, the cells were transfected with siRNAs targeting hNTCP. About 70% HDV infection was reduced by hNTCP knockdown as indicated by decreased levels of HDV viral RNAs (<xref ref-type="fig" rid="fig4">Figure 4B</xref>, upper-right). Similarly, HBV infection was also inhibited as indicated by significantly reduced HBeAg at multiple time points (<xref ref-type="fig" rid="fig4">Figure 4B</xref>, lower-left), as well as viral RNAs including the 3.5 kb RNA for HBV pre-C and pregenome RNA (pgRNA) and HBV total RNA (<xref ref-type="fig" rid="fig4">Figure 4B</xref>, lower-right) quantified at the end of the experiment. We further validated the critical role of hNTCP on HBV infection in PHHs, the natural host of the virus. Consistently, knockdown of hNTCP significantly reduced HBV infection, which was correlated with the NTCP mRNA knockdown efficiency. Both viral antigens and viral RNAs were decreased in cells transfected with hNTCP-specific siRNAs but not with the control siRNA (<xref ref-type="fig" rid="fig4">Figure 4C</xref>). Taken together, these data demonstrate NTCP as a common key cellular receptor component necessary for HBV and HDV infections of hepatocytes.</p></sec><sec id="s2-5"><title>NTCP expression renders nonsusceptible hepatocarcinoma cells susceptible to HDV and HBV infections</title><p>We then investigated the ability of NTCP to render nonsusceptible cells susceptible to viral infection. NTCP mRNA expression is low in human hepatocarcinoma cell lines that are not susceptible to HBV or HDV infection. The levels of NTCP mRNA in Huh-7 and HepG2 cells were about 10,000 times lower than that in primary human and <italic>Tupaia</italic> hepatocytes (<xref ref-type="fig" rid="fig5">Figure 5A</xref>). We first examined if NTCP expression renders Huh-7 susceptible to HDV infection. Human NTCP-transfected Huh-7 cells supported HDV infection with an efficiency comparable to that of PTHs; nearly 10% of cells were infected as shown by staining of the HDV delta antigen that mainly locates in cell nuclei, whereas Huh-7 cells transfected with a vector plasmid allowed no HDV infection (<xref ref-type="fig" rid="fig5">Figure 5B</xref>). Moreover, the infection could be blocked by known HBV entry inhibitors, such as pre-S1 lipopeptide and hepatitis B immune globulin (HBIG), demonstrating a genuine infection of HDV mediated by HBV envelope proteins on these cells (<xref ref-type="fig" rid="fig5">Figure 5C</xref>). HDV RNAs, including antigenomic RNA that is only produced during HDV replication, rapidly increased over time in the infected cells (<xref ref-type="fig" rid="fig5">Figure 5D</xref>). Moreover, the infection efficiency correlated with both the inoculation dose of HDV (<xref ref-type="fig" rid="fig5">Figure 5E</xref>) and the expression level of hNTCP (<xref ref-type="fig" rid="fig5">Figure 5F</xref>). HDV also infected HepG2 cells transiently transfected with hNTCP (<xref ref-type="fig" rid="fig5s1">Figure 5—figure supplement 1</xref>) as well as a cell line established by G418 selection of HepG2 cells after hNTCP transfection, which expresses hNTCP stably and could be readily stained by the FITC-pre-S1 peptide (<xref ref-type="fig" rid="fig5s2 fig5s3">Figure 5—figure supplements 2 and 3</xref>).<fig-group><fig id="fig5" position="float"><object-id pub-id-type="doi">10.7554/eLife.00049.013</object-id><label>Figure 5.</label><caption><title>NTCP expression confers Huh-7 susceptibility to HDV infection.</title><p>(<bold>A</bold>) NTCP mRNA expression level in the indicated cell lines and primary hepatocytes. The Huh-7 was used to normalize the relative expression levels in other cells. (<bold>B</bold>) 1 × 10<sup>5</sup> Huh-7 cells were transfected with 100 ng hNTCP/pcDNA6 or a vector control in 24-well plate and maintained in PMM, 24 hr after transfection, transfected cells were infected with HDV at 500 genome equivalent copies per cell. On 8 dpi, HDV delta antigen, which typically locates in nuclei, was stained with 4G5 antibody in green, nuclei were stained with DAPI in blue. (<bold>C</bold>) Huh-7 cells transfected with hNTCP were infected with HDV similarly as in panel B in the presence or absence of HBV entry inhibitors: HBIG (hepatitis B immune globulin), Myr-59, and anti-HBsAg mAb, 17B9. 4G5 was used as an antibody control. HDV RNA copies of infected cells were quantified by real-time RT-PCR on 6 dpi. (<bold>D</bold>) Huh-7 cells transfected with hNTCP were infected with HDV similarly as in panel B. The HDV viral RNAs in infected cells at indicated time points were quantified by real-time RT-PCR. (<bold>E</bold>) HDV infection with increasing multiplicities of genome equivalents (mge). With 100 ng hNTCP/pcDNA6, 1 × 10<sup>5</sup> Huh-7 cells were transfected, as in panel B. Transfected cells were infected with increasing mge of HDV as indicated. HDV delta antigen was detected as in panel B on 8 dpi. (<bold>F</bold>) HDV infection of cells with increasing levels of hNTCP. About 1 × 10<sup>5</sup> Huh-7 cells were transfected with a vector pcDNA6 or hNTCP/pcDNA6 at indicated amounts and cells were inoculated with 500 mge of HDV. HDV delta antigen was detected on 8 dpi as in panel B. NTCP: sodium taurocholate cotransporting polypeptide; PMM: primary hepatocytes maintenance medium; HBV: hepatitis B virus; HDV: hepatitis D virus; mAb: monoclonal antibody; HBsAg: HBV S antigen.</p><p><bold>DOI:</bold> <ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.013">http://dx.doi.org/10.7554/eLife.00049.013</ext-link></p></caption><graphic xlink:href="elife00049f005"/></fig><fig id="fig5s1" position="float" specific-use="child-fig"><object-id pub-id-type="doi">10.7554/eLife.00049.014</object-id><label>Figure 5—figure supplement 1.</label><caption><title>Infection of HDV on HepG2 cells expressing hNTCP.</title><p>About 2 × 105 HepG2 cells were transiently transfected with 0.3 µg hNTCP/pcDNA6 or a vector control and maintained in PMM. Cells were infected at 500 mge with HDV 24 hr after transfection. On 8 dpi, HDV delta antigen in infected cells was stained with mAb 4G5 (left) and the HDV viral RNAs were determined by real time RT-PCR. The competing Myr-59 peptide was tested at 200 nM (right).</p><p><bold>DOI:</bold> <ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.014">http://dx.doi.org/10.7554/eLife.00049.014</ext-link></p></caption><graphic xlink:href="elife00049fs006"/></fig><fig id="fig5s2" position="float" specific-use="child-fig"><object-id pub-id-type="doi">10.7554/eLife.00049.015</object-id><label>Figure 5—figure supplement 2.</label><caption><title>Infection of HDV on HepG2 cells expressing hNTCP.</title><p>HepG2 stable cell line stably expressing hNTCP (HepG2-hNTCP) was established by G418 selection after transient transfection. The expression of hNTCP was confirmed by staining with FITC-pre-S1 peptide.</p><p><bold>DOI:</bold> <ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.015">http://dx.doi.org/10.7554/eLife.00049.015</ext-link></p></caption><graphic xlink:href="elife00049fs007"/></fig><fig id="fig5s3" position="float" specific-use="child-fig"><object-id pub-id-type="doi">10.7554/eLife.00049.016</object-id><label>Figure 5—figure supplement 3.</label><caption><title>Infection of HDV on HepG2 cells expressing hNTCP.</title><p>Infection of HDV on HepG2-hNTCP stable cells was conducted in the presence or absence of entry inhibitor 200 nM Myr-59. HDV total RNA, HDV genomic RNA, and antigenomic RNA were assayed with real time qPCR on 8 dpi.</p><p><bold>DOI:</bold> <ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.016">http://dx.doi.org/10.7554/eLife.00049.016</ext-link></p></caption><graphic xlink:href="elife00049fs008"/></fig></fig-group></p><p>Although HDV is an accepted surrogate for HBV entry, we further examined if exogenous expression of NTCP directly renders nonsusceptible cells susceptible to HBV infection. HepG2 cells transiently transfected with either tsNTCP- or hNTCP-supported HBV infection as evidenced by continuous secretion of HBeAg over time and accumulation of HBV replicative intermediate viral RNAs in the infected cells. The entry inhibitor Myr-59 blocked the infection (<xref ref-type="fig" rid="fig6s1">Figure 6—figure supplement 1</xref>). More efficient HBV infection was achieved on stable HepG2-hNTCP cells with about 5–10% of the cells being infected as revealed by intracellular staining of HBsAg, whereas there was no HBV infection in the parental HepG2 cells (<xref ref-type="fig" rid="fig6">Figure 6A</xref>). HBV infection in the HepG2-hNTCP stable cells was further evidenced by the continuously increased production of HBeAg during the testing period. HBV entry inhibitors, in particular the Myr-59 peptide and 17B9, efficiently inhibited the infection (<xref ref-type="fig" rid="fig6">Figure 6B</xref>). The infection efficiency as evidenced by HBV total and 3.5 kb RNA levels correlated with the inoculation dose. Moreover, the formation of HBV covalently closed circular DNA (cccDNA), which is a replicative intermediate and transcriptional template for production of viral RNAs, was confirmed by Southern blot analysis (<xref ref-type="fig" rid="fig6">Figure 6D</xref>). To further demonstrate that the replicative intermediates of HBV were synthesized de novo in HepG2-hNTCP cells after infection, we performed additional time course experiments. HBV viral replicative intermediates, including cccDNA, the 3.5 kb HBV RNA, as well as the total HBV RNA in the HBV-infected HepG2-hNTCP cells were quantified at different time points. The cccDNA became detectable at 24 hr post-infection. It markedly increased at day 3 post-infection and maintained a relatively stable level for the rest of the time points examined, whereas the formation of HBV cccDNA was completely abolished if entry inhibitor Myr-59 was included with the initial virus inoculation (<xref ref-type="fig" rid="fig6">Figure 6E</xref>). Consistently, HBV RNA levels of the 3.5 kb transcript and the total HBV transcripts in the infected HepG2-hNTCP cells gradually increased during first several days of infection and reached a steady level after day 5 (<xref ref-type="fig" rid="fig6">Figure 6F</xref>). Together these data show that NTCP contributes substantially to HBV infection.<fig-group><fig id="fig6" position="float"><object-id pub-id-type="doi">10.7554/eLife.00049.017</object-id><label>Figure 6.</label><caption><title>NTCP expression confers susceptibility to HBV infection.</title><p>(<bold>A</bold>) Intracellular HBsAg expression in HBV-infected cells. HepG2-hNTCP stable cells or parental HepG2 cells were inoculated with HBV at 100 mge. On 9 dpi, intracellular HBsAg of infected cells on coverslips was stained with antibody 17B9 in green, and nuclei were stained with DAPI in blue. (<bold>B</bold>) Secreted HBeAg levels in the supernatants of HBV-infected cells. The cells were infected with HBV at 100 mge in the presence or absence of entry inhibitors as indicated. The medium was changed every 2 days. Secreted HBeAg was measured at 3, 5, 7 dpi; each time point represents the level of newly synthesized HBeAg within every 2 days. (<bold>C</bold>) HBV infection efficiency is correlated with the viral inoculum dose. With increasing dose of HBV, 2 × 10<sup>5</sup> HepG2-hNTCP cells were infected as indicated. HBV RNAs in infected cells was examined on 10 dpi with real-time RT-PCR for the total HBV RNAs and the 3.5 kb transcripts. (<bold>D</bold>) Southern blot analysis of cccDNA. HepaG2-hNTCP cells or HepG2 parental cells were infected with 100 mge of HBV in the presence or absence of Myr-59. HBV cccDNA was extracted from ∼ 2–3 × 10<sup>6</sup> infected cells on 7 dpi. Half of the extracted DNA of each sample was subjected to a 1.3% agarose gel and analyzed by Southern blotting. A plasmid DNA marker for cccDNA (see ‘Materials and methods’) at different concentrations from 0.8 to 100 pg was included in the same gel. (<bold>E</bold>)–(<bold>F</bold>) Kinetic analysis of HBV cccDNA and RNAs in HBV-infected HepG2-hNTCP cells. HBV cccDNA (in panel E) was quantified at indicated time points post infection (see ‘Materials and methods’). A dotted line indicates the background amplification. HBV RNA copies (in panel F) in the infected cells were measured at indicated time points, data of similarly infected parental HepG2 cells on 9 dpi were also shown. NTCP: sodium taurocholate cotransporting polypeptide; HBV: hepatitis B virus; HBsAg: HBV S antigen; HBeAg: HBV e antigen; mge: multiplicities of genome equivalents; dpi: days post-infection; cccDNA: covalently closed circular DNA; hNTCP: human NTCP.</p><p><bold>DOI:</bold> <ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.017">http://dx.doi.org/10.7554/eLife.00049.017</ext-link></p></caption><graphic xlink:href="elife00049f006"/></fig><fig id="fig6s1" position="float" specific-use="child-fig"><object-id pub-id-type="doi">10.7554/eLife.00049.018</object-id><label>Figure 6—figure supplement 1.</label><caption><title>NTCP expression confers susceptibility to HBV infection.</title><p>With 0.3 μg human or <italic>Tupaia</italic> NTCP/pcDNA6, or a vector control, 2 × 10<sup>5</sup> HepG2 cells were transiently transfected. The transfected cells were maintained in PMM. 24 hr after transfection, the cells were infected with HBV in the presence or absence of Myr-59 peptide (200 nM) as indicated at mge 100. Secreted viral HBeAg was examined with ELISA on days 4, 7, and 10 post-infection. HBV RNAs in infected cells was examined on 10 dpi for the total HBV RNAs or the 3.5 kb transcripts by real-time RT-PCR.</p><p><bold>DOI:</bold> <ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.018">http://dx.doi.org/10.7554/eLife.00049.018</ext-link></p></caption><graphic xlink:href="elife00049fs009"/></fig><fig id="fig6s2" position="float" specific-use="child-fig"><object-id pub-id-type="doi">10.7554/eLife.00049.019</object-id><label>Figure 6—figure supplement 2.</label><caption><title>Comparative HBV infection of PHHs and HepG2-NTCP cells.</title><p>PHHs from two donors (donor 1 and 2) or HepG2-NTCP cells in 48-well plate were infected with 100 HBV mge for 16 hr in the presence or absence of Myr-59 (200 nM). Same cells without viral inoculation were included as controls. The culture media were replenished every 2–3 days. On 8 days post-infection, the cells were fixed with 4% PFA, then stained for intracellular HBcAg with 5 μg/mL of anti-HBcAg-specific mAb 1C10, followed by Qdot 655 VIVID donkey anti-mouse IgG. HBcAg (red); nuclei (blue). The HBcAg staining images of PHHs from donor 1 are shown, which had higher infection efficiency than donor 2.</p><p><bold>DOI:</bold> <ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.019">http://dx.doi.org/10.7554/eLife.00049.019</ext-link></p></caption><graphic xlink:href="elife00049fs010"/></fig><fig id="fig6s3" position="float" specific-use="child-fig"><object-id pub-id-type="doi">10.7554/eLife.00049.020</object-id><label>Figure 6—figure supplement 3.</label><caption><title>Comparative HBV infection of PHHs and HepG2-NTCP cells.</title><p>HepG2-NTCP cells were infected as in <xref ref-type="fig" rid="fig6s2">Figure 6—figure supplement 2</xref> with 0, 4, 20, 100 mge of HBV for 16 hr. On 8 dpi, secreted HBeAg was examined by ELISA; intracellular HBV-specific RNAs were quantified with real-time RT-PCR. PHHs (donor 1 and 2) were infected and examined in parallel.</p><p><bold>DOI:</bold> <ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.020">http://dx.doi.org/10.7554/eLife.00049.020</ext-link></p></caption><graphic xlink:href="elife00049fs011"/></fig><fig id="fig6s4" position="float" specific-use="child-fig"><object-id pub-id-type="doi">10.7554/eLife.00049.021</object-id><label>Figure 6—figure supplement 4.</label><caption><title>Kinetics of HBV viral DNA in the culture medium of primary infection and reinfection of the released viruses on PHHs.</title><p>Kinetics of viral DNA in the culture medium of infected cells. Cells were plated in 48-well plate 1 day prior to infection, 1.5 × 10<sup>5</sup> HepG2 or HepG2-NTCP cells (left) and 7.5 × 10<sup>4</sup> attached PHHs (right) were infected in duplicate wells for 16 hr with 3.5 × 10<sup>7</sup> copies of HBV genome equivalent (genotype D) in a final volume of ∼200 μl per well, respectively. The culture media were harvested and refreshed every 2–3 days for viral DNA and HBeAg measurement. Upper-left: the levels of HBV DNA in all three groups, HepG2, HepG2-NTCP, and HepG2-NTCP, in the presence of 200 nM Myr-59 peptide blocker, drastically declined on 4 dpi. For the control infection in HepG2 cells, the levels of viral DNA continuously declined throughout the remaining testing period to ∼200 copies pe micorliter on 13 dpi. In contrast, viral DNA in the medium of infected HepG2-NTCP cells increased after the sharp decline on 4 dpi, reached to a maximum of 1.8 × 10<sup>3</sup> copies per microliter on 10 dpi, which was specifically inhibited by the entry inhibitor Myr-59 peptide. Upper-right: HBV DNA levels from infected PHH cultures in the presence or absence of Myr-59 peptide continuously decreased after a sharp drop on 4 dpi. However, in the absence of Myr-59, the viral DNA levels were two- to threefolds higher than that in the presence of Myr-59 from 7 to13 dpi. Bottom: significant HBeAg secretion was detected in HBV-infected HepG2-NTCP cells but not in the control HepG2 group and the group of HepG2-NTCP in the presence of Myr-59 (bottom-left). Efficient HBeAg secretion also was detected in PHH cultures in the absence of myr-59 peptide (lower-right).</p><p><bold>DOI:</bold> <ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.021">http://dx.doi.org/10.7554/eLife.00049.021</ext-link></p></caption><graphic xlink:href="elife00049fs012"/></fig><fig id="fig6s5" position="float" specific-use="child-fig"><object-id pub-id-type="doi">10.7554/eLife.00049.022</object-id><label>Figure 6—figure supplement 5.</label><caption><title>Kinetics of HBV viral DNA in the culture medium of primary infection and reinfection of the released viruses on PHHs.</title><p>PHH infection assay of HBV progeny viral particles released from infected NTCP-expressing HepG2 cells. 200 μl of culture medium collected from HBV-infected HepG2-NTCP cells on 7 or 10 dpi were added to 7.5 × 10<sup>4</sup> PHH 1 day after cell plating, incubated at 37°C for 16 hr in the presence or absence of 200 nM Myr-59 peptide (left), followed by washing the cells and refreshing medium every 2–3 days. HBV RNAs were quantified with real-time RT-PCR on day 13 post-infection. The levels of HBV-specific 3.5 kb RNA was below detection limit (data not shown). Intracellular HBV total RNA was detected in PHHs inoculated with culture media that were collected from infected HepG2-NTCP cells on both 7 and 10 dpi, containing 2.7 × 10<sup>5</sup> and 3.6 × 10<sup>5</sup> copies genome equivalent viral DNA, respectively. As a control, same PHHs were infected with 500 mge HBV and the intracellular viral total RNA was determined on 13 dpi (right). cDNA: PCR amplification using cDNA templates that were reverse transcribed from cellular total RNA; RNA: PCR amplification with cellular total RNA without reverse transcription step, representing the background amplification of viral DNA contamination in the RNA preparation. Dotted line: detection limit of HBV total RNA per nanogram total RNA with real-time RT-PCR assay.</p><p><bold>DOI:</bold> <ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.022">http://dx.doi.org/10.7554/eLife.00049.022</ext-link></p></caption><graphic xlink:href="elife00049fs013"/></fig></fig-group></p><p>We next compared the efficiency of HBV infection in HepG2-hNTCP cells with that in PHHs. As shown by intracellular staining of HBV core antigen (HBcAg) on day 8 post-infection, about 10% HepG2-NTCP cells were infected at multiplicities of genome equivalents (mge) of 100, which is comparable to the efficiency of HBV infection of PHHs (<xref ref-type="fig" rid="fig6s2">Figure 6—figure supplement 2</xref>). In contrast to PHHs, HepG2-NTCP cells propagate in cultures, thus the actual infection efficiency of HepG2-NTCP cells may be more likely than not underestimated by the observed end-point HBcAg staining. We also compared the levels of secreted HBeAg and intracellular viral RNAs in these two types of cells infected with three inoculation doses. The level of secreted HBeAg from HepG2-NTCP appeared to be higher than that in PHHs from two donors, whereas the levels of viral RNAs per nanogram of total cell RNA in both infected cell types are comparable (<xref ref-type="fig" rid="fig6s3">Figure 6—figure supplement 3</xref>). This may be partially explained by their different abilities in propagation and supporting viral replication and protein expression that would require more detailed studies.</p><p>Efficient HBV infection of PHHs or HepaRG cells in vitro normally requires high dose of virus inoculums, and only limited progeny viruses are produced after infection (<xref ref-type="bibr" rid="bib17">Gripon et al., 1988</xref>; <xref ref-type="bibr" rid="bib18">Gripon et al., 2002</xref>; <xref ref-type="bibr" rid="bib5">Boehm et al., 2005</xref>). To assess viral particles released from HBV-infected HepG2-NTCP cells, we first quantified viral DNA in the medium collected at different time points after the infection. As indicated by drastic decline of viral DNA level on day 4 post-infection, the majority of residual viruses from inocula were removed by changing the medium and washing during the first few days of infection. The levels of viral DNA in the media resulted from the ongoing infection during days 4–13 post-infection were low (equivalent to ∼1% of input viral DNA copies) despite significant amount of HBeAg secretion during this period. Similarly, only low levels of viral DNA were detected in the medium from HBV-infected PHHs (<xref ref-type="fig" rid="fig6s4">Figure 6—figure supplement 4</xref>, right). It is reasonable to speculate that some host factors that are lacking in cell cultures might be needed for efficient viral particles formation or releasing; or some cellular factors in cultures may hinder these processes during infection. The culture medium collected from infected HepG2-NTCP cells was subsequently tested for infection of PHHs. In line with the low HBV viral DNA level in the medium inoculum, very low number of intracellular HBV total RNA copies were detected in PHHs on day 13 post-infection (<xref ref-type="fig" rid="fig6s5">Figure 6—figure supplement 5</xref>), indicating that only very limited HBV infection might have occurred, which may be attributed to the low multiplicity of infection.</p></sec><sec id="s2-6"><title>Residues 157 to 165 of hNTCP are critical for pre-S1 binding and viral infections</title><p>We finally investigated the molecular determinants of NTCP for HBV and HDV infections. Crab-eating monkey (<italic>Macaca fascicularis</italic>) NTCP (mkNTCP) shares high protein sequence identity with hNTCP (96.3%) (<xref ref-type="fig" rid="fig7s1">Figure 7—figure supplement 1</xref>). However, mkNTCP neither supports HDV infection nor pre-S1 peptide (Myr-59) binding (<xref ref-type="fig" rid="fig7">Figure 7A</xref>), consistent with the known narrow species specificity of the virus. We then made a series of human NTCP variants to cover all the different amino acids between hNTCP and mkNTCP. In each variant, two or a few residues were mutated to their mkNTCP counterparts (<xref ref-type="fig" rid="fig7s1">Figure 7—figure supplement 1</xref>). Whereas most mutations did not significantly interfere with Myr-59 binding or HDV infection, alteration of five residues of hNTCP between aa 157–165 and its monkey counterpart (from <underline>KG</underline>I<underline>VI</underline>SLV<underline>L</underline> to <underline>GR</underline>I<underline>IL</underline>SLV<underline>P</underline>, distinct residues are underlined) completely abolished Myr-59 binding and the ability to support HDV infection. Remarkably, replacing the motif of aa 167–156 in mkNTCP with the corresponding human residues converted mkNTCP to an efficient receptor for HDV infection (<xref ref-type="fig" rid="fig7">Figure 7A</xref>). All the NTCP variants tested were examined for NTCP expression, and comparable levels of cell surface expression were confirmed (<xref ref-type="fig" rid="fig7">Figure 7B</xref>). Similar to HDV, HBV infection was also abolished on HepG2 cells expressing hNTCP carrying monkey-like mutations, <underline>GR</underline>I<underline>IL</underline>SLV<underline>P</underline>, while mkNTCP-bearing human residues <underline>KG</underline>I<underline>VI</underline>SLV<underline>L</underline> within the motif of aa 157–165 largely restored HBV infection (<xref ref-type="fig" rid="fig7">Figure 7C</xref>). These data show that residues between 157 and 165 of NTCP are crucial for binding to the receptor-binding region of the pre-S1 domain of the L protein of HBV, and critically contribute to NTCP-mediated HBV and HDV infections.<fig-group><fig id="fig7" position="float"><object-id pub-id-type="doi">10.7554/eLife.00049.023</object-id><label>Figure 7.</label><caption><title>Identification of a critical region (aa 157–165) of NTCP for pre-S1 binding and viral infections.</title><p>(<bold>A</bold>) Pre-S1 binding and HDV infection on cells expressing wild-type or mutant NTCPs. Corresponding amino acids (one-letter form) at the mutated positions of NTCP are shown for hNTCP, crab-eating monkey NTCP (mkNTCP), and tsNTCP. Huh-7 cells were transfected with plasmids encoding tsNTCP, hNTCP, mkNTCP, or NTCP mutants as indicated. The mutant NTCPs include hNTCP-bearing mutations of mkNTCP residues and mkNTCP-bearing mutations of human residues at indicated positions. The transfected cells were maintained in PMM for 24 hr and then either stained with 200 nM FITC-pre-S1 or infected with 500 mge HDV. HDV delta antigen in infected cells was detected with mAb 4G5 on 7 dpi. Replacing aa 157–165 of mkNTCP with human counterpart rendered mkNTCP an efficient receptor for pre-S1 binding and HDV infection. (<bold>B</bold>) All NTCP variants expressed comparable levels of NTCP. Huh-7 cells transfected as in panel A were biotinylated 24 hr after the transfection, then lysed and analyzed for cell surface NTCP expression (top), total NTCP expression (middle), and GAPDH (bottom), respectively. For cell surface expression, cell lysates were pulled down with streptavidin T1 Dynabeads and subsequently examined by western blot with mAb 1D4 recognizing a C9 tag at the C-terminus of each NTCP variant. For total NTCP expression, cell lysates were directly subjected to SDS-PAGE, followed by Western blot analysis with 1D4. (<bold>C</bold>) Effects of NTCP mutations on HBV infection. HepG2 cells were transfected with plasmids encoding hNTCP, mkNTCP, or hNTCP variants bearing the indicated monkey residues, or mkNTCP variants with the indicated human residues. Transfected cells were maintained in PMM for 24 hr, and subsequently infected with HBV at 100 mge. HBeAg and HBV 3.5 kb RNA were assayed on 6 dpi. Similar to panel B, comparable NTCP surface expression levels in the transfected HepG2 cells were confirmed for all the NTCP variants tested (<xref ref-type="fig" rid="fig7s2">Figure 7—figure supplement 2</xref>). NTCP: sodium taurocholate cotransporting polypeptide; HDV: hepatitis D virus; hNTCP: human NTCP; tsNTCP: <italic>Tupaia</italic> NTCP; PMM: primary hepatocytes maintenance medium; mge: multiplicities of genome equivalents; mAb: monoclonal antibody; HBV: hepatitis B virus; HBeAg: HBV e antigen; dpi: days post-infection.</p><p><bold>DOI:</bold> <ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.023">http://dx.doi.org/10.7554/eLife.00049.023</ext-link></p></caption><graphic xlink:href="elife00049f007"/></fig><fig id="fig7s1" position="float" specific-use="child-fig"><object-id pub-id-type="doi">10.7554/eLife.00049.024</object-id><label>Figure 7—figure supplement 1.</label><caption><title>Protein sequence alignment of human, monkey, and <italic>Tupaia</italic> NTCP. Residues different between human and monkey are highlighted in red. <italic>Tupaia</italic> residues different from human's are in blue. Residues 157–165 are boxed.</title><p><bold>DOI:</bold> <ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.024">http://dx.doi.org/10.7554/eLife.00049.024</ext-link></p></caption><graphic xlink:href="elife00049fs014"/></fig><fig id="fig7s2" position="float" specific-use="child-fig"><object-id pub-id-type="doi">10.7554/eLife.00049.025</object-id><label>Figure 7—figure supplement 2.</label><caption><title>Total and surface NTCP expression levels in the transfected HepG2 cells. Transiently transfected HepG2 cells from the same batch of transfection as in <xref ref-type="fig" rid="fig7">Figure 7C</xref> were analyzed for total or cell surface NTCP expression at 24 hr post-transfection as described in <xref ref-type="fig" rid="fig7">Figure 7B</xref>.</title><p><bold>DOI:</bold> <ext-link ext-link-type="doi" xlink:href="10.7554/eLife.00049.025">http://dx.doi.org/10.7554/eLife.00049.025</ext-link></p></caption><graphic xlink:href="elife00049fs015"/></fig></fig-group></p></sec></sec><sec id="s3" sec-type="discussion"><title>Discussion</title><p>In this study, by employing a unique approach of tandem affinity purification combined with MS analysis against a <italic>Tupaia</italic> hepatocyte proteome database established by deep sequencing, we revealed that the liver bile acid transporter, NTCP, specifically interacts with a key region in the pre-S1 domain of the HBV envelope L protein. By performing a series of virological analyses, we showed that silencing NTCP expression markedly inhibited viral infection of HBV and HDV in <italic>Tupaia</italic> as well as human hepatocytes. Exogenous expression of NTCP rendered nonsusceptible human hepatoma cells susceptible to the viral infections. The authentic viral infections in cells complemented with NTCP were shown by the kinetic analyses of several markers of viral infections, in particular the quantification of newly synthesized viral replicative intermediates. Moreover, the NTCP-rendered infections were blocked by known entry inhibitors. NTCP residues 157 to 165 were identified to be critical for pre-S1 binding and viral infections. These data clearly demonstrate that NTCP is a functional receptor for both HBV and HDV.</p><p>Identification of cellular receptor(s) of HBV and HDV has been challenging. In our study, we utilized a short peptide ligand, WT<sub>b</sub>, which was originated from the known receptor-binding domain of the L protein (<xref ref-type="bibr" rid="bib2">Barrera et al., 2005</xref>; <xref ref-type="bibr" rid="bib14">Glebe et al., 2005</xref>; <xref ref-type="bibr" rid="bib21">Gripon et al., 2005</xref>; <xref ref-type="bibr" rid="bib11">Engelke et al., 2006</xref>; <xref ref-type="bibr" rid="bib39">Schulze et al., 2010</xref>), but with specially designed properties suitable for photo-cross-linking and tandem purification. Two photo-leucines were incorporated into the critical receptor-binding region of WT<sub>b</sub> without interfering with its receptor-binding activity, which allowed highly specific zero distance cross-linking of its direct binding partner(s) but not other neighboring molecules. A biotin moiety of WT<sub>b</sub> facilitated purification of the complex of WT<sub>b</sub> and its binding partner(s) by streptavidin beads. An mAb, 2D3, was developed to recognize WT<sub>b</sub> on an epitope outside the receptor-binding site, serving as a highly specific tool for detection as well as additional affinity purification of the complex. Thus, the binding partner(s) was first cross-linked by WT<sub>b</sub>, and then purified by using streptavidin and 2D3 beads in tandem. The covalent interaction between the WT<sub>b</sub> ligand and its partner(s) enabled a purification process under high-stringency conditions, and efficient isolation was achieved irrespective of the nature of the binding partner(s) even if it is a membrane protein(s) with multiple transmembrane domains, like NTCP identified here.</p><p>NTCP (<italic>Slc10a1</italic>) is the founding member of the SLC10 family of solute carrier proteins. It is a hepatic Na<sup>+</sup> bile acid symporter and is responsible for cotransportation of sodium and bile acids across cellular membranes to maintain the enterohepatic circulation of bile acids (<xref ref-type="bibr" rid="bib22">Hagenbuch and Meier, 1994</xref>; <xref ref-type="bibr" rid="bib44">Stieger, 2011</xref>). NTCP is a multiple transmembrane glycoprotein presumed to span the cellular membrane up to 10 times with small extracellular loops (<xref ref-type="bibr" rid="bib34">Mareninova et al., 2005</xref>; <xref ref-type="bibr" rid="bib25">Hu et al., 2011</xref>). It is mainly expressed in the liver (<xref ref-type="bibr" rid="bib44">Stieger, 2011</xref>), consistent with the liver tropism of HBV and HDV. NTCP localizes to the sinusoidal (basolateral) plasma membrane of hepatocytes (<xref ref-type="bibr" rid="bib43">Stieger et al., 1994</xref>), a location that fits well with its receptor role for blood-borne HBV and HDV. Whereas HBV first attaches to hepatocytes mainly through heparan sulfate (<xref ref-type="bibr" rid="bib38">Schulze et al., 2007</xref>; <xref ref-type="bibr" rid="bib32">Leistner et al., 2008</xref>), our data demonstrate that the interaction between NTCP and L protein of HBV is highly specific, and NTCP is crucial for productive viral entry of hepatocytes. Consistent with previous reports on primary cultures of rat hepatocytes (<xref ref-type="bibr" rid="bib33">Liang et al., 1993</xref>; <xref ref-type="bibr" rid="bib37">Rippin et al., 2001</xref>), NTCP expression rapidly decreased over time in cultured PTHs after isolation. This may at least partially explain the observations that primary hepatocytes typically remain susceptible to HBV infections in vitro for only a few days after isolation from liver tissues (<xref ref-type="bibr" rid="bib17">Gripon et al., 1988</xref>; <xref ref-type="bibr" rid="bib40">Seeger et al., 2007</xref>).</p><p>NTCP is functionally conserved in mammalians, but protein sequences of NTCP vary among species, which is likely to contribute to the narrow species tropism of viral infection. Strikingly, despite the high level of protein sequence homology between human and monkey NTCP, the later did not support HBV and HDV infection. Replacing a small motif of aa 157–165 of mkNTCP with the corresponding hNTCP residues converted mkNTCP to a receptor for pre-S1 binding as well as HDV and HBV infection. Further studies are warranted to determine if and how NTCP contributes to the species specificity of HDV and HBV infection in other species. It also remains to be determined if other molecule(s) additional to NTCP contributes to the cellular entry of HBV and/or HDV as a coreceptor(s) or receptor component(s), and if other host factors such as the microenvironment or architecture of hepatocytes in liver, or soluble blood components like those that have been shown to involve in infections of other viruses (<xref ref-type="bibr" rid="bib41">Shayakhmetov et al., 2005</xref>; <xref ref-type="bibr" rid="bib36">Morizono et al., 2011</xref>), contribute to HBV and/or HDV infection.</p><p>Expression and subcellular distribution of NTCP are precisely regulated under physiological conditions. NTCP accounts for most, if not all, hepatic Na<sup>+</sup>-dependent bile acid transport (<xref ref-type="bibr" rid="bib44">Stieger, 2011</xref>). NTCP expression is low and inversely correlated with the degree of dedifferentiation of cancer cells in human hepatocellular carcinoma (<xref ref-type="bibr" rid="bib27">Kullak-Ublick et al., 1997</xref>; <xref ref-type="bibr" rid="bib56">Zollner et al., 2005</xref>) and the severity of HBV-related liver cirrhosis (<xref ref-type="bibr" rid="bib31">Lee and Kim, 2007</xref>). The newly discovered role of NTCP as an entry receptor for HBV and HDV raises interesting questions regarding its involvement in viral pathogenesis. Identification of NTCP as a functional receptor for HBV and HDV advances our understanding of their entry into host cells and may lead to new prevention and treatment strategies against these viruses and related diseases.</p></sec><sec id="s4" sec-type="materials|methods"><title>Materials and methods</title><sec id="s4-1"><title>Isolation and culture of primary <italic>Tupaia</italic> hepatocytes (PTHs)</title><p>Adult tree shrews (<italic>Tupaia belangeri chinensis</italic>) were housed in a <italic>Tupaia</italic> animal facility at the National Institute of Biological Science, Beijing. All studies were performed in accordance with institutionally approved protocols and adherent to guidelines of the National Institute of Biological Sciences Guide for the care and use of laboratory animals. PTH cells were obtained from anesthetized <italic>Tupaia</italic> (100–150 g) with a two-step perfusion method as previously described (<xref ref-type="bibr" rid="bib52">Walter et al., 1996</xref>). Cell suspensions after perfusion were filtered through a 70-μm cell strainer and centrifuged at 50 <italic>g</italic> for 3 min. The cell pellet containing PTHs was resuspended in plating medium of Williams E medium supplemented with 10% FBS, 5 μg/ml transferrin, 5 ng/ml sodium selenite, 2 mM L-glutamine, 100 U/ml penicillin, and 100 μg/ml streptomycin. The cells were then plated on collagen-coated cell culture dishes or plates. 4 hr after plating, medium were changed to primary hepatocytes maintenance medium (PMM), that is, Williams E medium supplemented with 5 μg/ml transferrin, 10 ng/ml EGF, 3 μg/ml insulin, 2 mM L-glutamine, 18 μg/ml hydrocortisone, 40 ng/ml dexamethasone, 5 ng/ml sodium selenite, 2% DMSO, 100 U/ml penicillin, and 100 μg/ml streptomycin. Cells were maintained in 5% CO<sub>2</sub> humidified incubator at 37°C with regular medium change every 2–3 days.</p></sec><sec id="s4-2"><title>Primary human hepatocytes (PHHs)</title><p>PHHs were purchased from Becton Dickinson (United States) or Shanghai RILD Inc. (Shanghai, China). The cells were cultured similarly as PTHs using the same plating medium and maintaining PMM medium as described above.</p></sec><sec id="s4-3"><title>Cell lines</title><p>Human embryonic kidney cell lines 293 and 293T, human cervix carcinoma cell line Hela, and human hepatocellular carcinoma cell line HepG2 were from American Type Culture Collection (ATCC); human hepatocellular carcinoma cell lines Huh-7, SMMC-7721 (SMMC), and Bel-7404 (BEL) were from the Cell Bank of Type Culture Collection, Chinese Academy of Sciences. The cells were cultured with Dulbecco's Modification of Eagle's Medium (DMEM; Invitrogen, United States) supplemented with 10% fetal bovine serum, 100 U/ml penicillin, and 100 μg/ml streptomycin at 37°C in 5% CO<sub>2</sub> humidified incubator except otherwise indicated. HepaRG cells were purchased from Biopredic International (Rennes, France) and were cultured following the product manual. Differentiated HepaRG cells were obtained following a two-step procedure as described by <xref ref-type="bibr" rid="bib18">Gripon et al. (2002)</xref>.</p></sec><sec id="s4-4"><title>Viruses</title><sec id="s4-4-1"><title>HDV</title><p>A plasmid containing a head to tail trimer of 1.0× HDV cDNA of a genotype I virus (Genebank accession number: AF425644.1) under the control of a CMV promoter was constructed with de novo synthesized HDV cDNA for the production of HDV RNPs. A pUC18 plasmid containing nucleotide 2431–1990 of HBV (Genotype D, Genebank accession number: U95551.1), or the same plasmid bearing mutation generated by site-directed mutagenesis, was used for expressing HBV envelope proteins under the control of endogenous HBV promoter. HDV virions were produced by transfection of the plasmids in Huh-7 as previously described by <xref ref-type="bibr" rid="bib49">Sureau et al. (1992)</xref>.</p></sec><sec id="s4-4-2"><title>HBV</title><p>HBV genotype B virus was obtained by ultracentrifugation of plasma from an HBV chronic carrier with written consent. HBV genotype D virus was produced by transfection of Huh-7 cells with a plasmid containing 1.05 copies of HBV genome under the control of a CMV promoter similarly as previously described by <xref ref-type="bibr" rid="bib3">Blanchet and Sureau (2006)</xref>. The Genebank accession numbers for the viruses are JX978431 and U95501.1, respectively.</p></sec><sec id="s4-4-3"><title>AAV8-HBV recombinants</title><p>Recombinant adeno-associated virus 8 (AAV8) carrying 1.05 copies of HBV genome was produced similarly as previously described (<xref ref-type="bibr" rid="bib54">Xiao et al., 1998</xref>) by cotransfection of 293 cells with plasmids for AAV8 packaging, 1.05× overlength HBV genome (genotype D) and adenovirus helper.</p></sec><sec id="s4-4-4"><title>Lenti-VSV-G</title><p>An HIV-1 genome-based lentivirus pseudotyped by glycoprotein of vesicular stomatitis virus and carrying a firefly luciferase reporter gene was produced by cotransfection of 293T cells with plasmids for VSV-G expression, HIV genome packaging, and luciferase reporter, respectively, as described (<xref ref-type="bibr" rid="bib47">Sui et al., 2005</xref>).</p><p>Virus-related experiments were conducted in a BSL-2 facility at the National Institute of Biological Sciences, Beijing.</p></sec></sec><sec id="s4-5"><title>Peptides and antibodies</title><p>Peptides with nonnatural amino acid <italic>L-2-amino-4,4-azi-pentanoic acid</italic> (L-photo-leucine) were synthesized by American Peptide Company Inc. (United States). Other peptides corresponding to the N-terminal of pre-S1 domain of HBV L protein (genotype C, strain S472, GeneBank EU554535.1) were synthesized by SunLight Peptides (Beijing, China). Mouse monoclonal antibodies (mAb) 2D3, 1C10, and 4G5 were generated in the laboratory; all are of IgG1 isotype. 2D3 specifically recognizes the 19–33 amino acids of the pre-S1 domain of HBV L protein; 1C10 recognizes HBcAg; 4G5 targets HDV delta antigen. 17B9, a mouse mAb-specific to HBV S protein, was provided by Dr. Lin Jiang, China National Biotec Group. Hepatitis B immune globulin (HBIG) was from the National Institutes for Food and Drug control, Beijing, China. 2D3 magnetic beads were prepared by covalently cross-linking 2D3 to Dynabeads M-270 Epoxy following manufacturer's instructions. Secondary antibodies for immunofluorescence staining and Western blot were purchased from Invitrogen or Sigma-Aldrich (United States).</p></sec><sec id="s4-6"><title>ELISA kits and other reagents</title><p>ELISA kits for HBsAg and HBeAg measurement were purchased from Wantai Pharm Inc. (Beijing, China). SYBR Premix Ex Taq quantitative real-time PCR kit and Reverse Transcriptase (RT) kit were from Takara Inc. (Beijing, China). Streptavidin-coupled magnetic beads (Dynabeads MyOne Streptavidin T1) and magnetic beads coated in glycidyl ether (Epoxy) groups (Dynabeads M-270 Epoxy) were purchased from Invitrogen. Other reagents were purchased from New England Biolabs (United States), Life Technologies (United States), or Sigma-Aldrich.</p></sec><sec id="s4-7"><title>Assays for HBV viral antigens from supernatant of infected cells</title><p>HBV viral antigens HBsAg and HBeAg were examined using 50 μl supernatants with commercial ELISA Kits (Wantai Pharmacy, Beijing, China) following manufacturer's instructions. In most cases, HBsAg level was normalized with WHO HBsAg reference serum (kindly provided by Dr. Zhenglun Liang from the National Institutes for Food and Drug control, Beijing, China) and presented as international units per milliliter.</p></sec><sec id="s4-8"><title>Quantification of HDV total RNA (genome equivalent) copies and HBV genome equivalent copies</title><sec id="s4-8-1"><title>HDV</title><p>Viral RNA was isolated with Trizol reagent following manufacturer's instructions. Total RNA was reverse transcribed into cDNA with random primers (PrimeScript RT kit; Takara) and 2 μl of the cDNA was used for real-time PCR assay. Primers for quantifying HDV total RNA or genome equivalent copies are complemented with the delta antigen coding region of HDV RNA genome: forward primer HDV-1184F, 5′-TCTTCCTCGGTCAACCTCTT-3′, and backward primer HDV-1307R, 5′-ACAAGGAGAGGCAGGATCAC-3′.</p></sec><sec id="s4-8-2"><title>HBV</title><p>Viral DNA was isolated by standard genomic DNA isolation method. The DNA was quantified using specific primers: 5′-GAGTGTGGATTCGCACTCC-3′ (forward) and 5′-GAGGCGAGGGAGTTCTTCT-3′ (backward) by real-time PCR. The viral genome equivalent copies were calculated based on a standard curve generated with known copy numbers. Real-time PCRs were performed using SYBR Premix Ex Taq kit on an ABI Fast 7500 real-time system instrument (Applied Biosystems, United States).</p></sec></sec><sec id="s4-9"><title>HDV binding and inhibition assays</title><p>With 5 × 10<sup>7</sup> copies of genome equivalent HDV, 1 × 10<sup>5</sup> of target cells were incubated at 16°C for 4 hr in the presence of 4% PEG8000, followed by extensive wash with cold PBS for four times. The cells were then lysed directly with Trizol reagent and followed by reverse transcription. RNA copy numbers of viral genome and internal control glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mRNA were determined by real-time PCR. For HDV binding inhibition assay, peptides were pre-incubated with target cells at 16°C for 1 hr before incubating with the virus; antibodies against viral envelope protein were pre-incubated with viruses before adding to target cells.</p></sec><sec id="s4-10"><title>HDV and HBV infection and inhibition assays</title><p>Viral infections of HDV and HBV were conducted in 48-well plates at multiplicities of genome equivalents of 500 and 100, respectively. Normally, 5 × 10<sup>7</sup> copies of genome equivalent HDV or 1 × 10<sup>7</sup> copies of genome equivalent HBV were inoculated in the presence or absence of entry inhibitors with 1 × 10<sup>5</sup> cells and incubated for 16 hr except otherwise indicated. Cells were then washed with medium for three times and maintained in PMM medium with medium change every 2–3 days. For HDV infection, 4% PEG 8000 was present during the 16 hours viral inoculation period similarly as described by <xref ref-type="bibr" rid="bib1">Barrera et al. (2004)</xref>. Viral infection at different time points was analyzed by measuring viral DNA/RNAs and viral antigen expression. Quantitative real time RT-PCR was used to quantify HDV total RNAs, strand-specific real time RT-PCR to determine copies of HDV genome and antigenome RNA (see below). For HBV viral infection on HepaRG cells and PHH, ∼ 4% PEG 8000 was present during the inoculation period as previously described by Gripon et al. (<xref ref-type="bibr" rid="bib19">Gripon et al., 1993</xref>; <xref ref-type="bibr" rid="bib18">Gripon et al., 2002</xref>; <xref ref-type="bibr" rid="bib38">Schulze et al., 2007</xref>). Viral infection of PTH was conducted in the absence of PEG8000. Culture medium was changed every 2–3 days. Secreted HBsAg and/or HBeAg were determined with commercial ELISA kits. Real-time PCR, with or without a prior reverse transcription step, was used for quantification of HBV-specific 3.5 kb pre-C and pregenomic RNA, total HBV sub-genomic RNA, and HBV cccDNA copies.</p></sec><sec id="s4-11"><title>Quantification of HDV genome and antigenome RNAs by strand-specific real time RT-PCR</title><p>The strand-specific qRT-PCR was performed as previously described by <xref ref-type="bibr" rid="bib12">Freitas et al. (2012)</xref>. Briefly, the genomic and antigenomic RNAs were reverse transcribed separately with strand-specific primers into cDNAs: primer HDV398R (5′-CGCTTCGGTCTCCTCTAACT-3′) for genomic RNA; primer HDV288F (5′-GCAGACAAATCACCTCCAGA-3′) for antigenomic RNA. The reverse transcribed cDNAs of genmomic or antigenmoic HDV RNAs were used as templates for real-time PCR using the HDV398R and HDV288F primer pair. TaqMan probe was 5′ FAM-AGAGCTCTGACGCGCGAGGAGTAAGC-TAMRA 3′. Real-time PCR assays were conducted with an ABI Fast 7500 real-time PCR instrument.</p></sec><sec id="s4-12"><title>Quantification of HBV-specific RNAs</title><p>Total RNA from HBV-infected cells was isolated with Trizol reagent (Invitrogen). About 400 ng total RNA was reverse transcribed into cDNA with PrimeScript RT kit (Takara) in a 10 μl reaction. cDNA derived from 20 ng total RNA was used as template for real-time PCR amplification. In a separate real-time PCR reaction, 20 ng of total RNA was directly used as template to assess the possible HBV viral DNA contamination in the RNA preparation. Primers (HBV2270F: 5′-GAGTGTGGATTCGCACTCC-3′) and (HBV2392R: 5′-GAGGCGAGGGAGTTCTTCT-3′) were used for HBV 3.5 kb transcripts; (HBV1805F: 5′-TCACCAGCACCATGCAAC-3′) and (HBV1896R: 5′-AAGCCACCCAAGGCACAG-3′) were for total HBV-specific transcripts. Amplification of 123-bp fragment for 3.5 kb transcripts and 92-bp product for total HBV-specific transcripts were both conducted by denaturation at 95°C for 30 s, followed by 40 cycles of 95°C denaturation for 3 s, and 60°C annealing/elongation for 30 s. Real-time PCR was performed using SYBR Premix Ex Taq kit on an ABI Fast 7500 real-time system instrument. Real-time PCR using either set of the primers generated highly specific amplification product. HBV RNA copy numbers were deduced from a standard curve generated from known nucleic acid quantities. Then the HBV RNA copy number per nanogram RNA in the infected cell cultures was calculated by subtracting the background amplification noise derived from the viral DNA contamination in the RNA preparation from that cDNA amplification. The signal-to-noise ratio for HBV total transcripts is usually ≥50, and for 3.5 kb transcripts ≥20. The real-time PCR detection limits for total HBV-specific transcripts and 3.5 kb transcripts are ∼0.5 and ∼3.5 copies per nanogram cellular total RNA, respectively.</p></sec><sec id="s4-13"><title>Southern blot analysis of HBV covalently closed circular DNA (cccDNA)</title><p>HBV cccDNA Southern blot was conducted following a similar procedure as described by <xref ref-type="bibr" rid="bib48">Summers et al. (1990)</xref> with modifications. Briefly, to selectively extract HBV cccDNA, infected hepG2-NTCP cells in 6-cm dishes were lysed with 1 ml lysis buffer at 37°C for 60 min, followed by addition of 0.25 ml of 2.5 M KCl and incubation at 4°C overnight. The lysis buffer was not supplemented with proteinase K, containing 50 mM Tris–HCl, pH 7.4, 10 mM EDTA, 150 mM NaCl, 1% SDS. The lysate was then clarified by centrifugation at 12,000 <italic>g</italic> for 30 min at 4°C and extracted with phenol and phenol:chloroform. DNA was precipitated with equal volume of isopropanol in the presence of 20 µg glycogen (Roche) and finally dissolved in TE buffer. The prepared DNA sample was then treated with plasmid-safe adenosine triphosphate (ATP)-dependent deoxyribonuclease DNase (Epicentre Technologies) following manufacturer's instructions. For Southern blotting, the plasmid-safe DNase-treated DNA was separated on a 1.3% agarose gel and then transferred to a nylon membrane (Hybond-N<sup>+</sup>; Amersham) using a standard neutral transfer procedure. A 3280-bp plasmid constructed by inserting a 588-bp HBV DNA fragment (from 1805 to 2392, genotype D, Southern blot probe) into a 2692 bp pMD18T vector (Takara) was also run on the same agarose gel to serve as the molecular marker for cccDNA in Southern blot analysis. The plasmid is of similar size of HBV genome and was mainly in supercoiled form; therefore it runs at similar size as HBV cccDNA in agarose gel. The nylon membrane was hybridized with a [α-<sup>32</sup>P] dCTP-labeled HBV probe (genotype D HBV DNA fragment from 1805 to 2392) prepared by random primer DNA labeling kit (Ver.2.0; Takara). Hybridization was carried out in 7 ml of Perfect Hyb Plus Hybridization Buffer (Sigma) with 1 hr pre-hybridization, followed by overnight hybridization at 67°C. The membrane was then washed once with 2× SSC/0.1% SDS, 1× SSC/0.1% SDS, and 0.5× SSC/0.1% SDS at 67°C for 20 min, respectively. Finally, the membrane was subjected to autoradiographic exposure.</p></sec><sec id="s4-14"><title>Quantification of HBV cccDNA by qPCR</title><p>HBV cccDNA (double-stranded DNA without nick and gap) was quantified by real-time PCR using a protocol as previously described (<xref ref-type="bibr" rid="bib6">Bowden et al., 2004</xref>; <xref ref-type="bibr" rid="bib53">Werle-Lapostolle et al., 2004</xref>) with modifications. In particular, specific primers for cccDNA detection reported by <xref ref-type="bibr" rid="bib13">Glebe et al. (2003)</xref> (ccc-1582F: 5′-TGCACTTCGCTTCACCT-3′; ccc-2316R: 5′-AGGGGCATTTGGTGGTC-3′) were validated and used for quantifying copy numbers of cccDNA using real-time PCR. Viral DNAs other than cccDNA, including single-stranded and relaxed circular DNAs, were degraded prior to amplification by treatment of the DNA templates with plasmid-safe adenosine triphosphate (ATP)-dependent deoxyribonuclease DNase (Epicentre Technologies). In brief, HBV-infected cells were lysed for 4 hr at 65°C in lysis buffer (50 mM Tris–HCl, pH 8.0, 50 mM EDTA, 100 mM NaCl, 1% SDS) supplemented with proteinase K (200 μg/ml) and followed by phenol-chloroform extraction. A total of 250 ng of the extracted DNA was digested with 5–10 units plasmid-safe DNase in a 50 μl volume for 8 hr at 37°C followed by DNase inactivation at 70°C for 30 min. 2 μl of the 50 μl reaction was then added to 20 μl of a real-time PCR reaction. Amplification of 735 bp cccDNA product was conducted by denaturation at 95°C for 5 min, followed by 45 cycles of denaturation at 95°C for 30 s, 62°C annealing for 25 s, and 72°C elongation for 45 s. HBV cccDNA copy numbers were calculated with a standard curve from plasmid with known nucleic acid quantities. The detection limit for cccDNA is ∼10 copies cccDNA per reaction (equivalent to 10 ng of total cell lysate DNA). Real-time PCR was performed with SYBR Premix Ex Taq kit on an ABI Fast 7500 real-time system instrument.</p></sec><sec id="s4-15"><title>PTH cDNA library construction, deep sequencing of <italic>Tupaia</italic> transcriptome, and bioinformatics analysis of Illumina deep sequencing-determined transcriptome</title><p>Primary <italic>Tupaia</italic> hepatocytes were isolated as described above. PTH mRNA was purified from 10 μg of total RNA using Oligo-dT magnetic beads. The mRNA was fragmented into small pieces by incubation with divalent cations at 94°C for exactly 5 min. The first strand cDNA was synthesized using random primers and SuperScript II reverse transcriptase (Invitrogen) with fragmented mRNAs. RNA template was then removed by RNase H, and double-stranded cDNA was prepared with DNA polymerase I. cDNA with blunt ends was created by T4 DNA polymerase and Klenow DNA polymerase and an ‘A’ base was subsequently added to the 3′ end of the blunt phosphorylated DNA fragments by Klenow fragment (3′ to 5′ exo minus). The cDNA was then ligated with adapters and then ran on a 2% agarose gel. The fragments with a size range from 200 ± 25 bp were purified, followed by amplification using the manufacturer's primers. The PCR products were then purified using QIAquick PCR purification Kit (Qiagen), quantified and diluted for cluster generation and deep sequencing. The 72-cycle pair-end sequencing was performed with Sequencing Kits (Version 5) on an Illumina Genome Analyzer IIx (Illumina, San Diego, United States). Illumina CASAVA pipeline v1.8.1 was used for sequence extraction and filtering.</p></sec><sec id="s4-16"><title>Bioinformatics analysis of Illumina deep sequencing-determined transcriptome of primary <italic>Tupaia</italic> hepatocytes</title><sec id="s4-16-1"><title>De novo reconstruction of transcriptome from cDNA library deep sequencing data</title><p>Total 253,919,616-pair 72 nt sequences with 36.6G base from the sequencing results of the hepatocyte cDNA library described above were fed to Trinity (<xref ref-type="bibr" rid="bib16">Grabherr et al., 2011</xref>) r20110519 using pair end RNA-seq protocol, with which 209,063 transcripts of average length of 1421 nt (minimum 300 nt, maximum 21,043 nt, and scaffold N50 of 3674 nt) were generated.</p></sec><sec id="s4-16-2"><title>Protein sequences identification and annotation</title><p>Following assembly, GENSCAN (<xref ref-type="bibr" rid="bib7">Burge and Karlin, 1997</xref>) was used with default parameters to identify coding sequences and the encoded protein sequences of these transcripts. A total of 91,479 protein sequences were identified. Each chosen protein sequence was first annotated with its corresponding blastp (<xref ref-type="bibr" rid="bib8">Camacho et al., 2009</xref>) matches from NCBI human protein sequences. Those not annotated in the first step were then submitted for similar annotation process with UniprotKB human proteome and NCBI nonredundant protein sequence database. Protein sequences that were not annotated by previous steps were submitted for annotation with their corresponding transcripts. Protein sequences with their corresponding transcripts that can be annotated by the blastx (<xref ref-type="bibr" rid="bib8">Camacho et al., 2009</xref>) hits of NCBI human protein sequences, UniProtKB human proteome or NCBI nonredundant protein sequence database were annotated with these hits from transcripts.</p></sec><sec id="s4-16-3"><title>Generation of <italic>Tupaia</italic> hepatocyte protein sequences database</title><p>All identified protein sequences were included in the hepatocyte protein sequences database. The protein sequences were labeled with corresponding functional annotation results. Any identified protein sequences that were not successfully annotated are labeled with ‘Uncharacterized protein’. Total 50,951 annotated and 40,528 uncharacterized protein sequences generated from the <italic>Tupaia</italic> hepatocytes transcriptome were combined into the database. A numeric ID (gi) was generated for each protein sequence in the database. The corresponding cDNA sequences were deposited to NCBI Transcriptome Shotgun Assembly (TSA) database of GenBank with accession number from JU120276 to JU170736 after removal of cDNAs shorter than 200 bp and a vector sequence.</p></sec><sec id="s4-16-4"><title>Analysis of protein classes in <italic>Tupaia</italic> hepatocytes</title><p>PANTHER database (<xref ref-type="bibr" rid="bib35">Mi et al., 2005</xref>) was used to determine the protein class distribution of annotated transcripts and protein sequences in primary <italic>Tupaia</italic> hepatocytes (PTHs) generated in this study and transcriptome from primary human hepatocytes (PHHs) reported by <xref ref-type="bibr" rid="bib23">Hart et al. (2010)</xref>.</p></sec></sec><sec id="s4-17"><title>Photo-cross-linking with peptide ligand and tandem purification of the target molecule(s)</title><p>L-photo-leucine-bearing wild-type bait peptide (WT<sub>b</sub>) or control bait peptide (N9K<sub>b</sub>) was dissolved in DMSO in dark. L-photo-leucine contains a photoactivatable diazirine ring, irradiation of UV light at 365 nm induces a loss of nitrogen of the diazirine ring, and yields a reactive carbene group with short half-life for covalent cross-linking at nearly zero distance. For tandem purification, WT<sub>b</sub> or N9K<sub>b</sub> at indicated concentrations was applied to ∼1 × 10<sup>7</sup> hepatocytes plated on collagen-coated dishes. Cells were cross-linked by UV irradiation and then washed to remove residual free peptides and subsequently lysed with 1 ml radioimmunoprecipitation assay (RIPA, pH 7.4) buffer containing 20 mM Tris, 150 mM NaCl, 0.1% SDS; 0.5% sodium deoxycholate, 1% NP40, and 1× protease inhibitor cocktail (Roche). The cell lysates were precipitated with 100 μl streptavidin T1 magnetic beads, eluted with 50 μl nonreducing SDS-PAGE loading buffer and then diluted with cold RIPA buffer to a final volume of 1 ml and was precipitated with 100 μl (1 × 10<sup>8</sup>) 2D3-conjugated M-270 dynabeads, then eluted with 100 μl nonreducing loading buffer. The elute, with or without PNGase F treatment, was diluted to 1 ml with RIPA buffer and was precipitated again with 100 μl streptavidin T1 magnetic beads, followed by extensive washing, and finally eluted by boiling 5 min with 20 μl SDS-PAGE loading buffer. The samples were then analyzed with 12% SDS–PAGE and silver staining. For photo-cross-linking analysis of primary cells, cell lines, or NTCP- or control plasmid-transfected Huh-7 or 293T cells, WT<sub>b</sub> or N9K<sub>b</sub> bait peptide in the presence or absence of competing peptide was applied to 2 × 10<sup>6</sup> cells, photo-cross-linking was conducted similarly as described above. The cross-linked samples were precipitated with streptavidin T1 magnetic beads and separated by SDS-PAGE, and followed by Western blotting with mAb 2D3 (recognizing bait peptides) or mAb 1D4 against C-terminal tag C9.</p></sec><sec id="s4-18"><title>LC-MS/MS and data analysis</title><p>Silver stained gel bands were cut, followed by in-gel reduction, alkylation, and trypsin digestion as previously described (<xref ref-type="bibr" rid="bib42">Shevchenko et al., 2006</xref>). Digested peptide mixtures containing 0.1% formic acid were loaded onto a 4 cm, 75-μm inner diameter fused silica capillary column packed with 10-μm YMC C18 material (YMC, Kyoto, Japan). After desalting, samples were separated with a Waters nano ACQUITY UltraPerformance LC (Waters, United States) and eluted to a LTQ-Orbitrap Velos mass spectrometer (Thermo Fisher Scientific, United States). The UPLC separation gradient included a 30-min gradient from 0% to 30% acetonitrile, followed by a 10-min gradient to 80% acetonitrile, then 10 min of 80% acetonitrile and back to 0% acetonitrile within 5 min. The mass spectrometer was operated in the data-dependent mode. Survey MS scans were acquired in the orbitrap with the resolution set to a value of 60,000. Each survey scan (300–2000 m/z) was followed by four data-dependent CID tandem mass (MS/MS) scans at 35% normalized collision energy and four data-dependent HCD tandem mass (MS/MS) scans at 40% normalized collision energy with 15,000 resolution in orbitrap. AGC target values were 500,000 for the survey scan, 10,000 for the ion trap MS/MS scan, and 50,000 for the orbitrap MS/MS scan. Target ions already selected for MS/MS were dynamically excluded for 30 s. Tandem mass spectra were searched against the Illumina deep sequencing-determined <italic>Tupaia</italic> hepatocyte protein database that was concatenated with reversed sequences to estimate false positives and was supplemented with the sequence of bait peptide under the Linux operating system using the ProLuCID (<xref ref-type="bibr" rid="bib55">Xu et al., 2006</xref>) protein database search algorithm with peptide mass tolerance of ±100 ppm, fragment ion mass tolerance of ±400 ppm, half tryptic specificity, and a static modification of 57.0215 on Cys due to carboxyamidomethylation. ProLuCID search results were then filtered with DTA Select 2.0 (<xref ref-type="bibr" rid="bib51">Tabb et al., 2002</xref>) using a cutoff of 1% for peptide false identification rate (–fp 0.01). Peptides with DeltaMass > 10 ppm (–DM 10) were rejected; the minimum number of peptides to identify a protein was set to 1 (–p 1).</p></sec><sec id="s4-19"><title>Immunofluorescence microscopy and FACS analysis of NTCP binding with pre-S1 peptides</title><p>Plasmid encoding human, or <italic>Tupaia</italic> NTCP, with or without a tag, or a control plasmid was transfected into cells. The cells were washed and blocked with 3% BSA 24–36 hr after transfection and then stained with biotin-labeled peptides at 4°C about 1–2 hr, followed by fixation with 4% paraformaldehyde (PFA) for 10 min. Cells were then stained with PE-labeled Streptavidin (eBioscience). In some cases, Myr-59 peptide containing the first 59 residues of pre-S1 domain with an N-terminal myristoylation modification and labeled with FITC (FITC-pre-S1) was applied to cells directly. The cell images were captured with a Nikon Eclipse T<italic>i</italic> Fluorescence Microscope or a Zeiss LSM 510 Meta Confocal Microscope. For FACS analysis, the FITC-pre-S1 stained cells without fixation were detached with 0.5 mM EDTA/PBS, washed and resuspended in PBS, and analyzed with a FACS LSRII instrument (BD).</p></sec><sec id="s4-20"><title>Viral infections on cells treated with siRNAs</title><sec id="s4-20-1"><title>For gene knockdown experiment on PTH Cells</title><p>Four siRNAs (tsNTCP-si1: 5′-CUAUGUAGGCAUUGUGAUAdTdT-3′, tsNTCP-si2: 5′-GUGUUAUCCUGGUGGUUAUdTdT-3′, tsNTCP-si3: 5′-GGACAUGAAUCUCAGCAUUdTdT-3′, tsNTCP-si4: 5′-GGGCAAGAGCAUCAUGUUUdTdT-3′) specifically targeting <italic>Tupaia slc10a1</italic> were designed through siDESIGN Center (<ext-link ext-link-type="uri" xlink:href="http://www.thermo.com/sidesign">www.thermo.com/sidesign</ext-link>). The specificities of these siRNAs were examined by searching against NCBI cDNA databases and the in-house <italic>Tupaia</italic> hepatocyte transcriptome to ensure they are free of off-target. siRNA with sequence Ctrl-si: 5′-UUCUCCGAACGUGUCACGUdTdT-3′ that is a scramble sequence with no known mammalian target sequence was used as a negative control. 20 nM siRNA were transfected into PTHs 24 h after initial seeding with lipofectamine 2000 (Invitrogen). tsNTCP mRNA level in the siRNA-transfected cells was quantified by real-time RT-PCR 3 days after siRNA transfection. Transfected PTH cells were infected on day 4 after siRNA transfection with HBV, HDV, AAV8-HBV (carrying 1.05 copies of HBV genome), or Lenti-VSV-G-Luc viruses. The secreted viral antigen HBsAg or HBeAg from HBV- and AAV8-HBV-infected cells were examined as indicated. For Lenti-VSV-G-Luc virus-infected cells, luciferase activity was determined on 6 days post-infection.</p></sec><sec id="s4-20-2"><title>For gene knockdown experiment on HepaRG cells</title><p><italic>SLC10A1</italic> from HepaRG cells was cloned, and the sequence was deposited to Genebank (accession number: JQ814895). Differentiated HepaRG cells in 48-well plate were transfected using RNAiMax (Invitrogen) with 20 nM of a siRNA pool (Qiagen) containing four specific siRNAs targeting different regions of human <italic>SLC10A1</italic> (5′-GGAUCGUCCUCAAAUCCAAdTdT-3′, 5′-GGAGUCAGCCGGAGAACAAdTd T-3′, 5′-GGACAAGGUGCCCUAUAAAdTdT-3′, 5′-GGUGCUAUGAGAAAUUCAAdTdT-3′) or a negative control siRNA (Ctrl-si: 5′-UUCUCCGAACGUGUCACGUdTdT-3′) as indicated. Gene knockdown efficiency was examined 4 days after transfection. Cells were then inoculated for 16 hr with HBV in the presence of 3.6% PEG8000. The secreted HBeAg and the 3.5 kb HBV RNA were determined on indicated days after infection.</p></sec><sec id="s4-20-3"><title>For gene knockdown experiment on PHH cells</title><p>Frozen PHH cells were thawed and subsequently transfected as that of PTH with human <italic>SLC10A1</italic>-specific siRNA 5′-CACAAGUGCUGUAGAAUUAdTdT-3′ (siR405) or a siRNA pool containing four <italic>SLC10A1</italic> specific siRNAs from QIAGEN (5′-GGAUCGUCCU CAAAUCCAAdTdT-3′, 5′-GGAGUCAGCCGGAGAACAAdTdT-3′, 5′-GGACAAGGUGCCC UAUAAAdTdT-3′, 5′-GGUGCUAUGAGAAAUUCAAdTdT-3′). Control siRNA 5′-UUCUCC GAACGUGUCACGUdTdT-3′ (Ctrl-si) has a scramble sequence with no known mammalian target sequence. Total 20 nM siRNA was transfected into ∼1.4 × 10<sup>5</sup> PHH cells per well in 48-well plate 24 h after initial cell seeding; the cells were then inoculated with HBV 72 hr after transfection. hNTCP mRNA level in the siRNA-transfected cells was quantified by qRT-PCR 3 days after siRNA transfection. The secreted antigens HBsAg and HBeAg, and the intracellular HBV RNAs were determined on indicated days after infection.</p></sec></sec><sec id="s4-21"><title>HBV and HDV infection on receptor complemented cells</title><p>HepG2 or Huh-7 cells were transfected with a plasmid expressing human, treeshrew, monkey NTCP, or an NTCP variant, or a vector control. Stable cell line expressing hNTCP was established by transfection of HepG2 cells with a plasmid encoding hNTCP (hNTCP/pcDNA3.1) followed by selection with 500 μg/ml G418 and maintained in DMEM supplemented with 10% FBS, 500 μg/ml G418, 100 U/ml penicillin, and 100 μg/ml streptomycin. The transfected cells, or HepG2-hNTCP stable cells, were cultured in PMM 24 hr before infection.</p><sec id="s4-21-1"><title>For HDV infection</title><p>With 5 × 10<sup>7</sup> genome equivalent copies of HDV, 1 × 10<sup>5</sup> cells were incubated, or otherwise indicated, for 24 hr in the presence or absence of entry inhibitors. HDV inoculation was conducted in the presence of 4% PEG8000. PMM was replenished every 2 days. On indicated days post-infection, cells were treated with 100% methanol for 10 min, followed by incubating with 5 μg/ml FITC-labeled mAb 4G5 for 1 hr at RT to stain HDV delta antigen. The nuclei were stained with 4′-6-diamidino-2-phenylindole (DAPI) before analyzing. HDV viral RNA copies in cell lysates were quantified by qPCR.</p></sec><sec id="s4-21-2"><title>For HBV infection</title><p>With ∼1 × 10<sup>7</sup> genome equivalent copies of HBV, 1 × 10<sup>5</sup> cells were inoculated, or indicated otherwise, in the presence of ∼4% PEG8000 as reported for primary human hepatocyte and HepaRG cell (<xref ref-type="bibr" rid="bib19">Gripon et al., 1993</xref>; <xref ref-type="bibr" rid="bib18">Gripon et al., 2002</xref>; <xref ref-type="bibr" rid="bib38">Schulze et al., 2007</xref>). The cells were maintained subsequently in PMM and the medium was changed every 2–3 days. For immunofluorescence microscopy analysis, HBV-infected cells, with or without replating on glass coverslips for imaging, were fixed with 4% Paraformaldehyde (PFA) and permeabilized with 0.5% TritionX-100, and then stained either with 10 μg/ml 17B9 against HBsAg followed by FITC-labeled goat anti-mouse IgG, or with 5 μg/ml 1C10 against HBcAg followed by Qdot 655 VIVID donkey anti-mouse IgG. 1 μg/ml of DAPI was added to stain the nucleus before analyzing. The cell images were captured with a Nikon Eclipse Ti Fluorescence Microscope or a Zeiss LSM 510 Meta Confocal Microscope. Secreted viral antigens and intracellular viral replication intermediates cccDNA and/or RNAs were examined on indicated days after infection.</p></sec></sec><sec id="s4-22"><title>Levels of total and surface protein expression of human and monkey NTCP variants</title><p>For cell surface expression, the transfected cells expressing NTCPs or mutants were surface-biotinylated with sulfo-NHS-LC-biotin (Pierce) following the manufacturer's instruction manual. The biotinylated cells were then lysed in 600 μl of 1× RIPA buffer supplemented with 1× protease inhibitor cocktail (Roche) and then treated with PNGaes F. Total cellular protein in the lysate was determined by using Bio-Rad DC Protein assay. About 300 μg Streptavidin T1 Dynabeads (Invitrogen) were then used to pull down surface-biotinylated proteins in the supernatants containing ∼160 μg of total cellular protein each sample. After extensive washing with 1× RIPA buffer, bound proteins were eluted, and separated by SDS-PAGE and subsequently examined with anti-C9 mAb 1D4 by Western blotting. For total NTCP expression, the same transfected cells expressing wild-type or mutant NTCPs were lysed with 1× RIPA buffer and treated with PNGase F. Each sample containing same amount of total cellular protein (∼8 μg) were loaded for SDS-PAGE followed by Western blotting analysis with mAb 1D4 that recognizes the C9 tag fused at the C-terminus of NTCPs.</p></sec><sec id="s4-23"><title>Data processing and analysis</title><p>All experiments were repeated 2–6 times with duplicate or triplicate samples for each condition unless indicated otherwise. A representative result of multiple independent experiments is present (n = 2–6) in each figure. Error bars shown in all figures represent standard deviation of the mean (n = 2–4). Dotted lines show detection limit except otherwise specified.</p></sec></sec></body><back><ack id="ack"><title>Acknowledgements</title><p>We thank Dr. She Chen and Lin Li at National Institute of Biological Sciences (NIBS) proteomic center for the mass spectrometry analysis, Dr. Cheng Zhan at imaging center, and Zhihua Qiu and Ping Qu at animal facility of NIBS for their excellent technical assistances. We thank Dr. Michael R. Farzan for helpful discussions and Drs. Xiaodong Wang and Hyeryun Choe for critical comments on the article. We are grateful for Drs. Lin Jiang, Zhenglun Liang, and Fengming Lu for providing us with valuable reagents.</p></ack><sec sec-type="additional-information"><title>Additional information</title><fn-group content-type="competing-interest"><title>Competing interests</title><fn fn-type="conflict" id="conf1"><p>The authors have declared that no competing interests exist</p></fn></fn-group><fn-group content-type="author-contribution"><title>Author contributions</title><fn fn-type="con" id="con1"><p>HY: Conception and design, Acquisition of data, Analysis and interpretation of data</p></fn><fn fn-type="con" id="con2"><p>GZ: Conception and design, Acquisition of data, Analysis and interpretation of data</p></fn><fn fn-type="con" id="con3"><p>GX: Acquisition of data, Analysis and interpretation of data</p></fn><fn fn-type="con" id="con4"><p>WH: Acquisition of data, Analysis and interpretation of data</p></fn><fn fn-type="con" id="con5"><p>ZJ: Acquisition of data, Analysis and interpretation of data</p></fn><fn fn-type="con" id="con6"><p>ZG: Acquisition of data, Analysis and interpretation of data</p></fn><fn fn-type="con" id="con7"><p>YH: Acquisition of data, Analysis and interpretation of data</p></fn><fn fn-type="con" id="con8"><p>YQ: Acquisition of data</p></fn><fn fn-type="con" id="con9"><p>BP: Acquisition of data</p></fn><fn fn-type="con" id="con10"><p>HW: Acquisition of data</p></fn><fn fn-type="con" id="con11"><p>LF: Acquisition of data</p></fn><fn fn-type="con" id="con12"><p>MS: Acquisition of data</p></fn><fn fn-type="con" id="con13"><p>PC: Acquisition of data</p></fn><fn fn-type="con" id="con14"><p>WG: Acquisition of data</p></fn><fn fn-type="con" id="con15"><p>BR: Acquisition of data</p></fn><fn fn-type="con" id="con16"><p>YS: Acquisition of data</p></fn><fn fn-type="con" id="con17"><p>TC: Acquisition of data, Analysis and interpretation of data</p></fn><fn fn-type="con" id="con18"><p>XF: Acquisition of data, Analysis and interpretation of data</p></fn><fn fn-type="con" id="con19"><p>JS: Conception and design, Analysis and interpretation of data, Drafting or revising the article</p></fn><fn fn-type="con" id="con20"><p>WL: Conception and design, Analysis and interpretation of data, Drafting or revising the article</p></fn></fn-group><fn-group content-type="ethics-information"><title>Ethics</title><fn fn-type="other"><p>Human subjects: This study was approved by the Institutional Review Board (IRB) of National Institute of Biological Sciences (IRBS030901) and consent was obtained; see the Materials and Methods section for details. The Helsinki guidelines were followed.</p></fn><fn fn-type="other"><p>Animal experimentation: The institutional animal care and use committee (IACUC) of the National Institute of Biological Sciences and the approved animal protocol is 09001T. The institutional guidelines for the care and use of laboratory animals were followed.</p></fn></fn-group></sec><sec sec-type="supplementary-material"><title>Additional files</title><sec sec-type="datasets"><title>Major datasets</title><p>The following datasets were generated</p><p><related-object content-type="generated-dataset" document-id="Dataset ID and/or url" document-id-type="dataset" document-type="data" id="dataro1"><name><surname>Jing</surname><given-names>Z</given-names></name>, <name><surname>Gao</surname><given-names>Z</given-names></name>, <name><surname>Xu</surname><given-names>G</given-names></name>, <name><surname>He</surname><given-names>W</given-names></name>, <name><surname>Cai</surname><given-names>T</given-names></name>, <name><surname>Li</surname><given-names>W</given-names></name>, <year>2012</year><x>, </x><source>Tree shrew (<italic>Tupaia belangeri chinensis</italic>) hepatocyte transcriptome assembly project</source><x>, </x><object-id pub-id-type="art-access-id">JU120276-JU170736</object-id><x>; </x><ext-link ext-link-type="uri" xlink:href="http://www.ncbi.nlm.nih.gov/genbank/">http://www.ncbi.nlm.nih.gov/genbank/</ext-link><x>, </x><comment>In the public domain at the Transcriptome Shotgun Assembly Database</comment></related-object></p><p><bold>Reporting standards:</bold> We followed the reporting standards for the Transcriptome Shotgun Assembly Sequence Database of NCBI, which are: Submitted sequences must be assembled from data experimentally determined by the submitter. Screened for vector contamination and any vector/linker sequence removed. This includes the removal of NextGen sequencing primers. Sequences cannot be less than 200 bp. Sequences should have no more than 10% n's or greater than 14 n's in a row. 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contrib-type="editor"><name><surname>Chen</surname><given-names>Zhijian J</given-names></name><role>Reviewing editor</role><aff><institution>UT Southwestern Medical School</institution>, <country>United States</country></aff></contrib></contrib-group></front-stub><body><boxed-text><p>eLife posts the editorial decision letter and author response on a selection of the published articles (subject to the approval of the authors). An edited version of the letter sent to the authors after peer review is shown, indicating the substantive concerns or comments; minor concerns are not usually shown. Reviewers have the opportunity to discuss the decision before the letter is sent (see <ext-link ext-link-type="uri" xlink:href="http://www.elifesciences.org/the-journal/review-process">review process</ext-link>). Similarly, the author response typically shows only responses to the major concerns raised by the reviewers.</p></boxed-text><p>Thank you for choosing to send your work entitled “Sodium taurocholate cotransporting polypeptide is a functional receptor for human hepatitis B and D virus” for consideration at <italic>eLife</italic>. Your article has been evaluated by a Senior Editor and 3 reviewers, one of whom is a member of <italic>eLife's</italic> Board of Reviewing Editors.</p><p>The Reviewing Editor and the other reviewers discussed their comments before we reached this decision, and the Reviewing Editor has assembled the following comments based on the reviewers' reports. Our goal is to provide the essential revision requirements as a single set of instructions, so that you have a clear view of the revisions that are necessary for us to publish your work.</p><p>This manuscript convincingly identifies NTCP as a receptor for HBV and HDV. The evidence in support of this conclusion includes: a) RNAi of NTCP in the virus-susceptible PTH and PHH cells reduced the virus infection; b) expression of NTCP in HBV non-permissive cell lines render these cells sensitive to HBV and HDV infections; c) swapping experiments showed that grafting of just 9 amino acids of human NTCP into monkey NTCP converts the monkey protein into a functional HBV/HDV receptor; d) The permissiveness of various cell lines to HBV/HDV infection correlates very well with the expression levels of NTCP; e) cross-linking experiments suggest that NTCP binds to the pre-S1 domain of the L envelope protein. The discovery of NTCP as the long-sought receptor for HBV and HDV is a major advance in the field and will have a large impact on both basic and clinical research in viral hepatitis.</p><p>This paper may be improved by addressing the following points:</p><p>1) It is not clear whether the viruses released from Huh7-NTCP or HepG2-NTCP could infect primary human hepatocytes (PHH). If so, what's the infectious titer?</p><p>2) Only 5–10% of stable HepG2-hNTCP cells were infected with HBV. How does this compare to primary human hepatocytes? An explanation for this low infection efficiency should be provided.</p></body></sub-article><sub-article article-type="reply" id="SA2"><front-stub><article-id pub-id-type="doi">10.7554/eLife.00049.027</article-id><title-group><article-title>Author response</article-title></title-group></front-stub><body><p><italic>1) It is not clear whether the viruses released from Huh7-NTCP or HepG2-NTCP could infect primary human hepatocytes (PHH). If so, what's the infectious titer</italic>?</p><p>To address this question, we performed new experiments. We found inoculation of primary human hepatocytes with the culture medium collected from HBV infected NTCP-expressing HepG2 cells only led to very limited infection on PHHs. This very low level of 2<sup>nd</sup> round infection was likely due to limited viral particles released from infected HepG2-NTCP cells. Indeed, only small amount of viral DNA was detected in the culture medium from the infected cells up to 13 days post primary infection. This is similar to HBV infection of PHHs. It has been known that HBV virion release from infected primary hepatocytes in culture is inefficient [1,2], only a level of less than 1% input virions could be detected in the culture medium at the maximum of HBV replication on PHH [2]. In our own experiments, the viral DNA level in culture medium is comparable between infected PHH and HepG2-NTCP cells: in both cultures, a level equivalent to ∼1% of input viral genome copies was detected. We included these data in new <xref ref-type="fig" rid="fig6s3">Figure 6—figure supplement 3</xref>. It is tempting to speculate that some host factors that are lacking in cell cultures <italic>in vitro</italic> might be needed for efficient viral particles formation or releasing; or some cellular factors in these cultures may hinder these processes during infection. Further studies are required to understand how the interactions between host cells and HBV viruses control the multiple steps of viral propagation and spreading after primary viral entry. The description for the new <xref ref-type="fig" rid="fig6s3">Figure 6—figure supplement 3</xref> was added in the Results section.</p><p><italic>2) Only 5–10% of stable HepG2-hNTCP cells were infected with HBV. How does this compare to primary human hepatocytes? An explanation for this low infection efficiency should be provided</italic>.</p><p>To compare the efficiency of HBV infection on HepG2-hNTCP cells and PHHs, we performed side-by-side experimental tests in which HepG2-hNTCP and PHHs from two independent donors were inoculated with same doses of HBV viruses, respectively. The results are shown in new <xref ref-type="fig" rid="fig6s2">Figure 6—figure supplement 2</xref>, with text added in the Results section. By staining intracellular HBV core antigen (HBcAg) on day 8 post infection (dpi 8), we estimated that about 10% of HepG2-hNTCP cells were infected at multiplicity of genome equivalents (mge) 100. For the two PHHs, the infection efficiency was up to ∼5% and ∼10%, respectively. HepG2-NTCP cells but not PHHs propagate in cultures, thus the actual infection efficiency of HepG2-hNTCP cells may be underestimated by the observed infection using HBcAg staining at the endpoint of infection. Nevertheless, the infection efficiency in HepG2-NTCP cells is comparable to PHHs of good quality at the same infection dose under the conditions tested. It has been reported that up to 5% of PHHs could be infected <italic>in vitro</italic> at ∼80 mge [3], more efficient infection on primary hepatocytes required HBV of thousands mge [3,4]. This is in contrast to the <italic>in vivo</italic> infection of HBV in chimpanzees, for which much lower HBV mge is sufficient [5]. It is possible that the microenvironment and architecture of hepatocytes in liver or other host factors, such as soluble ones in blood or other co-receptor/entry components that are lacking or lost in cultures, may also contribute to the efficiency of HBV infection.</p><p><bold>References:</bold></p><p>1 Gripon, P. et al. Hepatitis B virus infection of adult human hepatocytes cultured in the presence of dimethyl sulfoxide. J Virol 62, 4136–4143 (1988).</p><p>2 Boehm, ST., Thasler, WE., Weiss,TS., Jilg,W. in Models of Viral Hepatitis Vol. 25 (ed Roggendorf M, Von Weizsacker F) 119–134 (Karger, 2005).</p><p>3 Schulze, A., Mills, K., Weiss, T. S. & Urban, S. Hepatocyte polarization is essential for the productive entry of the hepatitis B virus. Hepatology 55, 373–383, (2012).</p><p>4 Glebe, D. et al. Pre-s1 antigen-dependent infection of Tupaia hepatocyte cultures with human hepatitis B virus. J Virol 77, 9511–9521 (2003).</p><p>5 Asabe, S. et al. The size of the viral inoculum contributes to the outcome of hepatitis B virus infection. J Virol 83, 9652–9662 (2009).</p></body></sub-article></article> |