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python + mongodb flat text files importer

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Octocat-spinner-32 easiparse
Octocat-spinner-32 .gitignore
Octocat-spinner-32 LICENSE.txt
Octocat-spinner-32 README.md
Octocat-spinner-32 config.yaml
Octocat-spinner-32 easiparse.py
Octocat-spinner-32 setup.py
README.md

Easiparse

What for ?

Parsing and importing to mongodb any flat text file following a flexible configuration. A flat text file is for example MEDLINE format from pubmed.gov :

PMID- 19712554 OWN - NLM STAT- MEDLINE DA - 20090828 DCOM- 20091109 IS - 1472-6491 (Electronic) ...

Dependencies

  • Python 2.6
  • MongoDB, and pymongo

How-to

  • configure easiparse editing config.yaml
  • launch mongodb server
  • launch the software : $ python easiparse.py
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