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A graph database of Galaxy tool interoperability

Project Number: 30

Research area alignment

  • ELIXIR Galaxy Community ELIXIR Tools platform, Tools and Services Registry, Workflows & Interoperability groups


Submitter: Wolfgang Maier


  • Wolfgang Maier


  • Wolfgang Maier, Jon Ison,

Nominated participant(s)

  • Anup Kumar,: Member of the Galaxy EU team working on deep learning models for tool suggestions Piotr Jaroslaw Chmura, & Ivan Kuzmin,: developers

Expected outcomes

    • a graph-based database of tools the traversal of which defines analysis workflows at various levels of tool interoperability confidence levels
  • a public frontend for Galaxy instances for exploring networks of tools and suggesting possible workflows from analysis start and end points

Expected audience

  • Galaxy tool developers and experienced end-users & Galaxy server admins for curated content development Bioinformatics operations ontologists (EDAM, bioschema) for automated content generation ecosystem developers and experts Graph database developers for database layout decisions Members of the Galaxy Working Group within the ELIXIR Tools Platform for integration into Galaxy

Number of expected hacking days: 4

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