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Support tools for rapid adoption of Bioschemas through automatic resources registration, updates and metadata integration

Project Number: 4

Research area alignment

  • ELIXIR Interoperability Platform
  • This project aligns with the ELIXIR Interoperability Platform, and involves (ELIXIR Infrastructure and Recommended Interoperability Resource), UniProt (ELIXIR Core Resource), InterMine (ELIXIR Recommended Interoperability Resource) and Bioschemas (ELIXIR Core Project).

Merged from

  • Support tools for rapid adoption of Bioschemas (and metadata through
  • Automating registration and updates to increase FAIR-ness within ELIXIR and beyond


Submitter: Manuel Bernal Llinares


  • Manuel Bernal Llinares
  • Daniela Butano


  • Manuel Bernal Llinares
  • Daniela Butano - InterMine, UK Node Sergio Contrino - InterMine, UK Node

Nominated participant(s)

  • Sarala Wimalaratne;; / Bioschemas expert Javier Ferrer Gómez;; Javascript, Angular, Java, Python Nick Juty;; identifiers expert
  • For UniProt (has agreed): Jerven Bolleman - UniProt expert, Swiss Node For (has agreed): Sarala Wimalaratne OR Nick Juty - expert, ELIXIR Hub

Expected outcomes

  • The outcome of this project will be a fast lightweight javascript widget for searching and visualising metadata related to a given Compact Identifier, which can easily be integrated within or third party web applications.
  • 1.Facilitated registration of data resources in automatically updated with any changes to resources

Expected audience

  • This project is expected to attract the attention of the bioinformatics community who are interested in working with any of the following technologies: Javascript, HTML5, CSS3, Java, Python, Django, Shell Script, Kubernetes and Google Cloud.
  • Data resource providers to help define the metadata that should describe the data provided and to prototype endpoints for their resources. Programmers to prototype the crawler.

Number of expected hacking days: 4

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