Skip to content

Create korogenoest #179

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 62 commits into from
Jun 27, 2023
Merged

Create korogenoest #179

merged 62 commits into from
Jun 27, 2023

Conversation

hedi-ee
Copy link
Contributor

@hedi-ee hedi-ee commented Apr 17, 2023

Estonian showcase for sars-cov-sequencing

Estonian showcase for sars-cov-sequencing
@hedi-ee hedi-ee requested a review from a team as a code owner April 17, 2023 10:15
Figure for Estonian showcase
@bedroesb bedroesb self-requested a review as a code owner April 18, 2023 08:56
Recommended dataflow image for korogenoest showcase
@bedroesb
Copy link
Member

@hedi-ee I fused the other two PRs into this one

@rabuono rabuono linked an issue May 3, 2023 that may be closed by this pull request
@bedroesb bedroesb requested a review from rabuono as a code owner May 3, 2023 08:29
@bedroesb bedroesb force-pushed the hedi-ee-patch-3 branch from 8fdbc37 to 3604c7e Compare May 3, 2023 08:36
LianeHughes and others added 13 commits May 3, 2023 14:29
* Add Swedish national page

* minor corrections

* correct postcovid name

* remove search exclude field

* update sidebar

* add space

Added space between affiliations to match other contributors

* Remove access info

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>

* Update national-resources/sweden.md

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>

* Update national-resources/sweden.md

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>

* Update national-resources/sweden.md

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>

* Update national-resources/sweden.md

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>

* Update national-resources/sweden.md

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>

* Update national-resources/sweden.md

* Update national-resources/sweden.md

Co-authored-by: LianeHughes <liane.hughes@scilifelab.uu.se>

* Update national-resources/sweden.md

Co-authored-by: LianeHughes <liane.hughes@scilifelab.uu.se>

* Update national-resources/sweden.md

* Update national-resources/sweden.md

Co-authored-by: LianeHughes <liane.hughes@scilifelab.uu.se>

* Update national-resources/sweden.md

Co-authored-by: LianeHughes <liane.hughes@scilifelab.uu.se>

* Update national-resources/sweden.md

Co-authored-by: LianeHughes <liane.hughes@scilifelab.uu.se>

* Update national-resources/sweden.md

Co-authored-by: LianeHughes <liane.hughes@scilifelab.uu.se>

* Update national-resources/sweden.md

Co-authored-by: LianeHughes <liane.hughes@scilifelab.uu.se>

* Update national-resources/sweden.md

Co-authored-by: LianeHughes <liane.hughes@scilifelab.uu.se>

* Update national-resources/sweden.md

* add news for Sweden national resources page

---------

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>
* custom theme

* test case

* more options

* more kinds

* Update _bootstrap_variables.scss

* some more changes

* est with arrow

* adding arrows

* Preview changes tutorial + 'For editors' in sidebar contribute (#171)

* preview changes tutorial

* add info on how to create a page

* Update contribute/preview-changes.md

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>

* Update contribute/preview-changes.md

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>

* Update contribute/preview-changes.md

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>

---------

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>

* Link to License

* change name List of page IDs (#176)

* update to snake-case (#175)

* Add general introduction for national pages (#147)

* Add general introduction for national pages

This is modified from the text originally read for Sweden, general agreement from the national resources teams that this would be a good way to introduce the national pages for now.

* Remove references to 'recent'

Prevent information from becoming too quickly outdated

* add info about page aim

* Update national-resources/index.md

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>

---------

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>

* Sweden national page (#150)

* Add Swedish national page

* minor corrections

* correct postcovid name

* remove search exclude field

* update sidebar

* add space

Added space between affiliations to match other contributors

* Remove access info

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>

* Update national-resources/sweden.md

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>

* Update national-resources/sweden.md

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>

* Update national-resources/sweden.md

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>

* Update national-resources/sweden.md

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>

* Update national-resources/sweden.md

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>

* Update national-resources/sweden.md

* Update national-resources/sweden.md

Co-authored-by: LianeHughes <liane.hughes@scilifelab.uu.se>

* Update national-resources/sweden.md

Co-authored-by: LianeHughes <liane.hughes@scilifelab.uu.se>

* Update national-resources/sweden.md

* Update national-resources/sweden.md

Co-authored-by: LianeHughes <liane.hughes@scilifelab.uu.se>

* Update national-resources/sweden.md

Co-authored-by: LianeHughes <liane.hughes@scilifelab.uu.se>

* Update national-resources/sweden.md

Co-authored-by: LianeHughes <liane.hughes@scilifelab.uu.se>

* Update national-resources/sweden.md

Co-authored-by: LianeHughes <liane.hughes@scilifelab.uu.se>

* Update national-resources/sweden.md

Co-authored-by: LianeHughes <liane.hughes@scilifelab.uu.se>

* Update national-resources/sweden.md

Co-authored-by: LianeHughes <liane.hughes@scilifelab.uu.se>

* Update national-resources/sweden.md

* add news for Sweden national resources page

---------

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>

* update version

* update with new logo

* updated favicon

* bigger font

* less borders

* wide toc

* more use of theme colors

* better variable use

* x-blue topnav

* fix

* sidebar title

* less red

* no shadows

* new icons

* more spacing toc

* less bold

* less strong

* carouse fix

* mobile fix

* mobile

* less

* add mediakit

* update style guide

* sidebar fix

* better fix

---------

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>
Co-authored-by: LianeHughes <liane.hughes@scilifelab.uu.se>
* article

* Update _data/news.yml

thanks a lot for the review !

Co-authored-by: LianeHughes <liane.hughes@scilifelab.uu.se>

---------

Co-authored-by: LianeHughes <liane.hughes@scilifelab.uu.se>
* add new icon

* plain svg

* cleanup svg
* add new logos

* typo

* more spacing

* missing png

* better quality

* center vertically
* Add Galaxy Covid19 showcase

* Some more fixes

* Add wm75 to contributors

* Add Acknowledgments section

* Add covid19-galaxy to sidebar

* change page id to snake-case

* Update ENA logo

* Fix Galaxy Europe link :)

* Add sponsors section

* First round of applying code review suggestions

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>

* Improve presentation of reusability

* Update image description according to review comment

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>

* Update showcase/covid19-galaxy.md

* Apply suggestions from code review

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>

* Accept reviewer suggestion for rewrite of paragraph

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>

* Update showcase/covid19-galaxy.md

* Update showcase/covid19-galaxy.md

---------

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>
Co-authored-by: Björn Grüning <bjoern@gruenings.eu>
hedi-ee and others added 5 commits May 17, 2023 11:57
edited the details about metadata checklist filling

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>
specified Dragen vs Galaxy pipeline usage timeline
we validated that we did not use the container and edited the text accordingly

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>
mentioned the particular workflows, I am afraid at this stage the workflow hub step is not doable

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>
Changed sponsors to funding

Co-authored-by: rafael buono <77321541+rabuono@users.noreply.github.com>
@bedroesb bedroesb mentioned this pull request Jun 27, 2023
Copy link
Collaborator

@rabuono rabuono left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Great work!
Lets merge it!

@rabuono rabuono merged commit f53125c into main Jun 27, 2023
@rabuono rabuono deleted the hedi-ee-patch-3 branch June 27, 2023 18:44
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

Showcase page: SARS-CoV-2 sequencing in Estonia 2021-2022
6 participants