Issues with installation and usage #173
Description
I had been using emacs-jupyter for some time, but after upgrading Python and removing elpy from my init.el, I could not get jupyter-run-repl to work anymore.
I decided to uninstall the emacs-jupyter version I had, since it was older, and try a more recent one.
However, I am getting an issue right during install. I get the following error messages on the compile log:
~/.emacs.d/elpa/latex-extra-20170817.147/latex-extra.elc:Warning: reference to
free variable ‘latex-extra-mode’
Leaving directory ‘/Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50’
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-R.el at Wed Aug 21 18:31:40 2019
Entering directory ‘/Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/’
In end of data:
jupyter-R.el:63:1:Warning: the function ‘jupyter-browse-url-in-temp-file’ is
not known to be defined.
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-base.el at Wed Aug 21 18:31:40 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-c++.el at Wed Aug 21 18:31:40 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-channel-ioloop-comm.el at Wed Aug 21 18:31:40 2019
In end of data:
jupyter-channel-ioloop-comm.el:166:1:Warning: the following functions are not known to be defined:
jupyter-error-if-not-client-class-p, jupyter-session-endpoints
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-channel-ioloop.el at Wed Aug 21 18:31:40 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-channel.el at Wed Aug 21 18:31:40 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-client.el at Wed Aug 21 18:31:40 2019
jupyter-client.el:966:1:Warning: Unused lexical variable
‘jupyter-pop-up-frame’
jupyter-client.el:1287:54:Warning: attempt to inline
‘jupyter-weak-ref-resolve’ before it was defined
In end of data:
jupyter-client.el:2112:1:Warning: the following functions are not known to be defined:
jupyter-pop-up-frame-p, jupyter-line-count-greater-p,
jupyter-display-current-buffer-guess-where,
jupyter-server-mode-set-client, jupyter-weak-ref,
jupyter-weak-ref-resolve
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-comm-layer.el at Wed Aug 21 18:31:40 2019
jupyter-comm-layer.el:145:65:Warning: attempt to inline
‘jupyter-weak-ref-resolve’ before it was defined
jupyter-comm-layer.el:145:65:Warning: attempt to inline
‘jupyter-weak-ref-resolve’ before it was defined
jupyter-comm-layer.el:158:32:Warning: attempt to inline
‘jupyter-weak-ref-resolve’ before it was defined
jupyter-comm-layer.el:168:55:Warning: attempt to inline
‘jupyter-weak-ref-resolve’ before it was defined
In end of data:
jupyter-comm-layer.el:203:1:Warning: the following functions are not known to be defined:
jupyter-weak-ref-resolve, jupyter-weak-ref
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-env.el at Wed Aug 21 18:31:40 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-ioloop-comm.el at Wed Aug 21 18:31:40 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-ioloop.el at Wed Aug 21 18:31:40 2019
In jupyter-ioloop--function:
jupyter-ioloop.el:360:8:Warning: function jupyter-ioloop--function used to
take 1 argument, now takes 2
In jupyter-ioloop--make-filter:
jupyter-ioloop.el:424:12:Warning: attempt to inline ‘jupyter-weak-ref-resolve’
before it was defined
In end of data:
jupyter-ioloop.el:530:1:Warning: the following functions are not known to be defined:
jupyter-weak-ref-resolve, jupyter-weak-ref
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-javascript.el at Wed Aug 21 18:31:40 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-julia.el at Wed Aug 21 18:31:40 2019
In end of data:
jupyter-julia.el:244:1:Warning: the function ‘jupyter-repl-cell-cond’ is not
known to be defined.
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-kernel-manager.el at Wed Aug 21 18:31:40 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-kernel-process-manager.el at Wed Aug 21 18:31:40 2019
In jupyter--kernel-died-process-sentinel:
jupyter-kernel-process-manager.el:72:22:Warning: attempt to inline
‘jupyter-weak-ref-resolve’ before it was defined
In end of data:
jupyter-kernel-process-manager.el:426:1:Warning: the following functions are not known to be defined:
jupyter-kernel-name, jupyter-weak-ref, jupyter-weak-ref-resolve,
jupyter-kernel-died, jupyter-available-local-ports,
jupyter-error-if-not-client-class-p, jupyter-guess-kernelspec
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-kernelspec.el at Wed Aug 21 18:31:40 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-messages.el at Wed Aug 21 18:31:40 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-mime.el at Wed Aug 21 18:31:40 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-org-client.el at Wed Aug 21 18:31:41 2019
In jupyter-org--image-result:
jupyter-org-client.el:861:8:Warning: function jupyter-org--image-result used
to take 3-4 arguments, now takes 4-5
In jupyter-org--do-insert-result:
jupyter-org-client.el:1469:14:Warning: jupyter-org--insert-result called with
3 arguments, but accepts only 2
In end of data:
jupyter-org-client.el:1605:1:Warning: the following functions are not known to be defined:
jupyter-map-pending-requests, jupyter-ansi-color-apply-on-region,
jupyter-pandoc-convert
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-org-extensions.el at Wed Aug 21 18:31:41 2019
In end of data:
jupyter-org-extensions.el:681:1:Warning: the function
‘jupyter-org-request-at-point’ is not known to be defined.
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-python.el at Wed Aug 21 18:31:41 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-repl.el at Wed Aug 21 18:31:41 2019
In end of data:
jupyter-repl.el:2231:1:Warning: the following functions are not known to be defined:
jupyter-client-has-manager-p, jupyter-eval-add-callbacks,
jupyter-eval-string-command, jupyter-error-if-not-client-class-p
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-rest-api.el at Wed Aug 21 18:31:41 2019
In jupyter-api-url-request:
jupyter-rest-api.el:223:30:Warning: reference to free variable
‘jupyter-version’
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-server-ioloop.el at Wed Aug 21 18:31:41 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-server.el at Wed Aug 21 18:31:41 2019
jupyter-server.el:268:60:Warning: attempt to inline ‘jupyter-weak-ref-resolve’
before it was defined
jupyter-server.el:417:38:Warning: attempt to inline ‘jupyter-weak-ref-resolve’
before it was defined
In end of data:
jupyter-server.el:898:1:Warning: the following functions are not known to be defined:
jupyter-weak-ref-resolve, jupyter-guess-kernelspec,
jupyter-error-if-not-client-class-p, jupyter-bootstrap-repl,
jupyter-decode-time, jupyter-format-time-low-res
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-tramp.el at Wed Aug 21 18:31:41 2019
jupyter-tramp.el:68:1:Error: Given parent class jupyter-meta-kernel is not a class
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-widget-client.el at Wed Aug 21 18:31:41 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-zmq-channel-comm.el at Wed Aug 21 18:31:41 2019
jupyter-zmq-channel-comm.el:85:27:Warning: attempt to inline
‘jupyter-weak-ref-resolve’ before it was defined
In end of data:
jupyter-zmq-channel-comm.el:157:1:Warning: the following functions are not known to be defined:
jupyter-weak-ref, jupyter-weak-ref-resolve,
jupyter-session-endpoints
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-zmq-channel-ioloop.el at Wed Aug 21 18:31:41 2019
In jupyter-zmq-channel-ioloop--recv-messages:
jupyter-zmq-channel-ioloop.el:72:22:Warning: reference to free variable
‘jupyter-channel-ioloop-channels’
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-zmq-channel.el at Wed Aug 21 18:31:41 2019
In jupyter-hb--send-ping:
jupyter-zmq-channel.el:243:15:Warning: attempt to inline
‘jupyter-weak-ref-resolve’ before it was defined
In end of data:
jupyter-zmq-channel.el:267:1:Warning: the following functions are not known to be defined:
jupyter-weak-ref-resolve, jupyter-weak-ref
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter.el at Wed Aug 21 18:31:42 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/ob-jupyter.el at Wed Aug 21 18:31:42 2019
In org-babel-jupyter--server-repl:
ob-jupyter.el:256:8:Warning: org-babel-jupyter-aliases-from-kernelspecs called
with 2 arguments, but accepts only 0-1
In end of data:
ob-jupyter.el:603:1:Warning: the following functions are not known to be defined:
jupyter-guess-kernelspec, jupyter-org-pending-async-results
Compiling no file at Wed Aug 21 18:32:52 2019
Leaving directory ‘/Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50’
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-R.el at Wed Aug 21 18:36:46 2019
Entering directory ‘/Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/’
In end of data:
jupyter-R.el:63:1:Warning: the function ‘jupyter-browse-url-in-temp-file’ is
not known to be defined.
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-base.el at Wed Aug 21 18:36:46 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-c++.el at Wed Aug 21 18:36:46 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-channel-ioloop-comm.el at Wed Aug 21 18:36:46 2019
In end of data:
jupyter-channel-ioloop-comm.el:166:1:Warning: the following functions are not known to be defined:
jupyter-error-if-not-client-class-p, jupyter-session-endpoints
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-channel-ioloop.el at Wed Aug 21 18:36:46 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-channel.el at Wed Aug 21 18:36:46 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-client.el at Wed Aug 21 18:36:46 2019
jupyter-client.el:966:1:Warning: Unused lexical variable
‘jupyter-pop-up-frame’
jupyter-client.el:1287:54:Warning: attempt to inline
‘jupyter-weak-ref-resolve’ before it was defined
In end of data:
jupyter-client.el:2112:1:Warning: the following functions are not known to be defined:
jupyter-pop-up-frame-p, jupyter-line-count-greater-p,
jupyter-display-current-buffer-guess-where,
jupyter-server-mode-set-client, jupyter-weak-ref,
jupyter-weak-ref-resolve
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-comm-layer.el at Wed Aug 21 18:36:46 2019
jupyter-comm-layer.el:145:65:Warning: attempt to inline
‘jupyter-weak-ref-resolve’ before it was defined
jupyter-comm-layer.el:145:65:Warning: attempt to inline
‘jupyter-weak-ref-resolve’ before it was defined
jupyter-comm-layer.el:158:32:Warning: attempt to inline
‘jupyter-weak-ref-resolve’ before it was defined
jupyter-comm-layer.el:168:55:Warning: attempt to inline
‘jupyter-weak-ref-resolve’ before it was defined
In end of data:
jupyter-comm-layer.el:203:1:Warning: the following functions are not known to be defined:
jupyter-weak-ref-resolve, jupyter-weak-ref
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-env.el at Wed Aug 21 18:36:46 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-ioloop-comm.el at Wed Aug 21 18:36:46 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-ioloop.el at Wed Aug 21 18:36:46 2019
In jupyter-ioloop--function:
jupyter-ioloop.el:360:8:Warning: function jupyter-ioloop--function used to
take 1 argument, now takes 2
In jupyter-ioloop--make-filter:
jupyter-ioloop.el:424:12:Warning: attempt to inline ‘jupyter-weak-ref-resolve’
before it was defined
In end of data:
jupyter-ioloop.el:530:1:Warning: the following functions are not known to be defined:
jupyter-weak-ref-resolve, jupyter-weak-ref
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-javascript.el at Wed Aug 21 18:36:46 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-julia.el at Wed Aug 21 18:36:46 2019
In end of data:
jupyter-julia.el:244:1:Warning: the function ‘jupyter-repl-cell-cond’ is not
known to be defined.
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-kernel-manager.el at Wed Aug 21 18:36:46 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-kernel-process-manager.el at Wed Aug 21 18:36:46 2019
In jupyter--kernel-died-process-sentinel:
jupyter-kernel-process-manager.el:72:22:Warning: attempt to inline
‘jupyter-weak-ref-resolve’ before it was defined
In end of data:
jupyter-kernel-process-manager.el:426:1:Warning: the following functions are not known to be defined:
jupyter-kernel-name, jupyter-weak-ref, jupyter-weak-ref-resolve,
jupyter-kernel-died, jupyter-available-local-ports,
jupyter-error-if-not-client-class-p, jupyter-guess-kernelspec
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-kernelspec.el at Wed Aug 21 18:36:46 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-messages.el at Wed Aug 21 18:36:46 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-mime.el at Wed Aug 21 18:36:46 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-org-client.el at Wed Aug 21 18:36:47 2019
In jupyter-org--image-result:
jupyter-org-client.el:861:8:Warning: function jupyter-org--image-result used
to take 3-4 arguments, now takes 4-5
In jupyter-org--do-insert-result:
jupyter-org-client.el:1469:14:Warning: jupyter-org--insert-result called with
3 arguments, but accepts only 2
In end of data:
jupyter-org-client.el:1605:1:Warning: the following functions are not known to be defined:
jupyter-map-pending-requests, jupyter-ansi-color-apply-on-region,
jupyter-pandoc-convert
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-org-extensions.el at Wed Aug 21 18:36:47 2019
In end of data:
jupyter-org-extensions.el:681:1:Warning: the function
‘jupyter-org-request-at-point’ is not known to be defined.
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-python.el at Wed Aug 21 18:36:47 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-repl.el at Wed Aug 21 18:36:47 2019
In end of data:
jupyter-repl.el:2231:1:Warning: the following functions are not known to be defined:
jupyter-client-has-manager-p, jupyter-eval-add-callbacks,
jupyter-eval-string-command, jupyter-error-if-not-client-class-p
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-rest-api.el at Wed Aug 21 18:36:47 2019
In jupyter-api-url-request:
jupyter-rest-api.el:223:30:Warning: reference to free variable
‘jupyter-version’
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-server-ioloop.el at Wed Aug 21 18:36:47 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-server.el at Wed Aug 21 18:36:47 2019
jupyter-server.el:268:60:Warning: attempt to inline ‘jupyter-weak-ref-resolve’
before it was defined
jupyter-server.el:417:38:Warning: attempt to inline ‘jupyter-weak-ref-resolve’
before it was defined
In end of data:
jupyter-server.el:898:1:Warning: the following functions are not known to be defined:
jupyter-weak-ref-resolve, jupyter-guess-kernelspec,
jupyter-error-if-not-client-class-p, jupyter-bootstrap-repl,
jupyter-decode-time, jupyter-format-time-low-res
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-tramp.el at Wed Aug 21 18:36:47 2019
jupyter-tramp.el:68:1:Error: Given parent class jupyter-meta-kernel is not a class
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-widget-client.el at Wed Aug 21 18:36:48 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-zmq-channel-comm.el at Wed Aug 21 18:36:48 2019
jupyter-zmq-channel-comm.el:85:27:Warning: attempt to inline
‘jupyter-weak-ref-resolve’ before it was defined
In end of data:
jupyter-zmq-channel-comm.el:157:1:Warning: the following functions are not known to be defined:
jupyter-weak-ref, jupyter-weak-ref-resolve,
jupyter-session-endpoints
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-zmq-channel-ioloop.el at Wed Aug 21 18:36:48 2019
In jupyter-zmq-channel-ioloop--recv-messages:
jupyter-zmq-channel-ioloop.el:72:22:Warning: reference to free variable
‘jupyter-channel-ioloop-channels’
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter-zmq-channel.el at Wed Aug 21 18:36:48 2019
In jupyter-hb--send-ping:
jupyter-zmq-channel.el:243:15:Warning: attempt to inline
‘jupyter-weak-ref-resolve’ before it was defined
In end of data:
jupyter-zmq-channel.el:267:1:Warning: the following functions are not known to be defined:
jupyter-weak-ref-resolve, jupyter-weak-ref
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/jupyter.el at Wed Aug 21 18:36:48 2019
Compiling file /Users/guilhermesalome/.emacs.d/elpa/jupyter-20190814.50/ob-jupyter.el at Wed Aug 21 18:36:48 2019
In org-babel-jupyter--server-repl:
ob-jupyter.el:256:8:Warning: org-babel-jupyter-aliases-from-kernelspecs called
with 2 arguments, but accepts only 0-1
In end of data:
ob-jupyter.el:603:1:Warning: the following functions are not known to be defined:
jupyter-guess-kernelspec, jupyter-org-pending-async-results
Do you have any idea on what could be happening and how I could fix it?
Thanks for helping! :D