Skip to content

emcgl/trap

master
Switch branches/tags

Name already in use

A tag already exists with the provided branch name. Many Git commands accept both tag and branch names, so creating this branch may cause unexpected behavior. Are you sure you want to create this branch?
Code

Latest commit

 

Git stats

Files

Permalink
Failed to load latest commit information.
Type
Name
Latest commit message
Commit time
 
 
sql
 
 
 
 
www
 
 
 
 
The Transcriptomic Age Prediction Tool has been described in: 
Peters MJ, Joehanes R, Pilling LC, Conneely K, Powell J et al. The transcriptional landscape of age in human peripheral blood. Nature Communications. 2015 Oct 22;6:8570. DOI: 10.1038/ncomms9570 

TRAP Overview
=============

Trap presents the user a web interface to configure an analysis. A grid scheduler checks for
this configuration and runs it in sequence and results are copied to user directory and
made available via the web interface.

Trap uses:
httpd		- to present dashboard via web interface
mysqldb/mariadb - to store user information and job meta data
Sun Gridengine 	- to batch run analyses
R 		- to run actual analyses

Trap is programmed in SQL / R / HTML and PHP

The folder provide:
   backend - the R scripts, transcriptome data and analysis invokation shell scripts  
   sql     - database layouts for users, jobs for the web frontend
   www     - PHP web application code - web frontend 

In order to manually run: check the comments in the R scripts inside the backend directory (SCALED-PREDICTOR-XXXX.R)

About

The Transcriptomic Age Prediction Tool

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published