DrugBox: Parsers for various drug info databases
Python 3 parsers for the following resources:
TODO (add parsers for): | ChEMBL | STITCH
from drugbox import drugbank file_name = "drugbank.xml" out_file = "targets.tsv" # Output uniprot ids of (pharmacological) targets of drugs drugbank.output_data(file_name, out_file, target_type_list = ["target"]) # Output gene symbols of all targets (enzymes, transporters, carriers, etc) of drugs along with the known action information drugbank.output_target_info(file_name, out_file)
See toolbox repository for a related package with other parsers (DrugBank, ChEMBL and STITCH) for Python 2 and extra functionality.