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  1. mrc-ide/PhyDyn mrc-ide/PhyDyn Public

    PhyDyn: Epidemiological modelling in BEAST

    Java 22 7

  2. emvolz-phylodynamics/phydynR emvolz-phylodynamics/phydynR Public

    Coalescent simulation and likelihood for phylodynamic inference

    C++ 13 6

  3. rclustnet rclustnet Public

    Generate a random graph with desired size, clustering coefficient, and degree distribution

    R 4

  4. treedater treedater Public

    Scalable relaxed clock phylogenetic dating

    R 21 11

  5. mrc-ide/skygrowth mrc-ide/skygrowth Public

    Phylodynamic inference

    R 18 5