From e82b5fcb593666b2eda02143c8e8bf4cd1f8b195 Mon Sep 17 00:00:00 2001 From: Adrian Englhardt Date: Fri, 3 Jan 2020 16:12:52 +0100 Subject: [PATCH] Update dependencies and bump version. --- .travis.yml | 1 + Manifest.toml | 241 +++++++++++------- Project.toml | 2 +- .../classifier_svdd_neg_eps_test.jl | 2 +- test/classifiers/classifier_svdd_neg_test.jl | 2 +- 5 files changed, 157 insertions(+), 91 deletions(-) diff --git a/.travis.yml b/.travis.yml index 4941794..4097677 100644 --- a/.travis.yml +++ b/.travis.yml @@ -5,6 +5,7 @@ julia: - 1.0 - 1.1 - 1.2 + - 1.3 matrix: fast_finish: true diff --git a/Manifest.toml b/Manifest.toml index d2e4fe3..d778555 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -1,31 +1,47 @@ -# This file is machine-generated - editing it directly is not advised - [[Arpack]] deps = ["BinaryProvider", "Libdl", "LinearAlgebra"] -git-tree-sha1 = "07a2c077bdd4b6d23a40342a8a108e2ee5e58ab6" +git-tree-sha1 = "cd64c112638582ba4f0be9c3e20656499c508565" uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" -version = "0.3.1" +version = "0.3.2" [[Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +[[BenchmarkTools]] +deps = ["JSON", "Printf", "Statistics"] +git-tree-sha1 = "90b73db83791c5f83155016dd1cc1f684d4e1361" +uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" +version = "0.4.3" + [[BinDeps]] -deps = ["Compat", "Libdl", "SHA", "URIParser"] -git-tree-sha1 = "12093ca6cdd0ee547c39b1870e0c9c3f154d9ca9" +deps = ["Libdl", "Pkg", "SHA", "URIParser", "Unicode"] +git-tree-sha1 = "66158ad56b4bf6cc8413b37d0b7bc52402682764" uuid = "9e28174c-4ba2-5203-b857-d8d62c4213ee" -version = "0.8.10" +version = "1.0.0" [[BinaryProvider]] deps = ["Libdl", "SHA"] -git-tree-sha1 = "c7361ce8a2129f20b0e05a89f7070820cfed6648" +git-tree-sha1 = "5b08ed6036d9d3f0ee6369410b830f8873d4024c" uuid = "b99e7846-7c00-51b0-8f62-c81ae34c0232" -version = "0.5.4" +version = "0.5.8" [[Calculus]] -deps = ["Compat"] -git-tree-sha1 = "f60954495a7afcee4136f78d1d60350abd37a409" +deps = ["LinearAlgebra"] +git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.4.1" +version = "0.5.1" + +[[CodecBzip2]] +deps = ["BinaryProvider", "Libdl", "TranscodingStreams"] +git-tree-sha1 = "5db086e510c11b4c87d05067627eadb2dc079995" +uuid = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd" +version = "0.6.0" + +[[CodecZlib]] +deps = ["BinaryProvider", "Libdl", "TranscodingStreams"] +git-tree-sha1 = "05916673a2627dd91b4969ff8ba6941bc85a960e" +uuid = "944b1d66-785c-5afd-91f1-9de20f533193" +version = "0.6.0" [[CommonSubexpressions]] deps = ["Test"] @@ -35,15 +51,20 @@ version = "0.2.0" [[Compat]] deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"] -git-tree-sha1 = "84aa74986c5b9b898b0d1acaf3258741ee64754f" +git-tree-sha1 = "ed2c4abadf84c53d9e58510b5fc48912c2336fbb" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "2.1.0" +version = "2.2.0" + +[[DataAPI]] +git-tree-sha1 = "674b67f344687a88310213ddfa8a2b3c76cc4252" +uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" +version = "1.1.0" [[DataStructures]] -deps = ["InteractiveUtils", "OrderedCollections", "Random", "Serialization", "Test"] -git-tree-sha1 = "ca971f03e146cf144a9e2f2ce59674f5bf0e8038" +deps = ["InteractiveUtils", "OrderedCollections"] +git-tree-sha1 = "f784254f428fb8fd7ac15982e5862a38a44523d3" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.15.0" +version = "0.17.7" [[Dates]] deps = ["Printf"] @@ -54,72 +75,95 @@ deps = ["Mmap"] uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" [[DiffResults]] -deps = ["Compat", "StaticArrays"] -git-tree-sha1 = "34a4a1e8be7bc99bc9c611b895b5baf37a80584c" +deps = ["StaticArrays"] +git-tree-sha1 = "da24935df8e0c6cf28de340b958f6aac88eaa0cc" uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "0.0.4" +version = "1.0.2" [[DiffRules]] -deps = ["Random", "Test"] -git-tree-sha1 = "dc0869fb2f5b23466b32ea799bd82c76480167f7" +deps = ["NaNMath", "Random", "SpecialFunctions"] +git-tree-sha1 = "10dca52cf6d4a62d82528262921daf63b99704a2" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "0.0.10" +version = "1.0.0" [[Distances]] -deps = ["LinearAlgebra", "Printf", "Random", "Statistics", "Test"] -git-tree-sha1 = "a135c7c062023051953141da8437ed74f89d767a" +deps = ["LinearAlgebra", "Statistics"] +git-tree-sha1 = "23717536c81b63e250f682b0e0933769eecd1411" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.8.0" +version = "0.8.2" [[Distributed]] -deps = ["Random", "Serialization", "Sockets"] +deps = ["LinearAlgebra", "Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] -deps = ["LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "4ae0ff1a3a556383f7b1b004f5fb964b26ac96c9" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "e063d0b5d27180b98edacd2b1cb90ecfbc171385" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.20.0" +version = "0.21.12" [[EzXML]] -deps = ["BinaryProvider", "Libdl", "Pkg", "Printf", "Test"] -git-tree-sha1 = "ad00b79cca4bb3eabb4209217859c553af4401f5" +deps = ["BinaryProvider", "Libdl", "Printf"] +git-tree-sha1 = "469de9cb996a9c03f31905619ff3c33e905711f3" uuid = "8f5d6c58-4d21-5cfd-889c-e3ad7ee6a615" -version = "0.9.1" +version = "0.9.5" + +[[FillArrays]] +deps = ["LinearAlgebra", "Random", "SparseArrays"] +git-tree-sha1 = "1a9fe4e1323f38de0ba4da49eafd15b25ec62298" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "0.8.2" [[ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "InteractiveUtils", "LinearAlgebra", "NaNMath", "Random", "SparseArrays", "SpecialFunctions", "StaticArrays", "Test"] -git-tree-sha1 = "4c4d727f1b7e0092134fabfab6396b8945c1ea5b" +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "NaNMath", "Random", "SpecialFunctions", "StaticArrays"] +git-tree-sha1 = "840700059391d36e2498d89c2e82c08f261f2a2a" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.3" +version = "0.10.8" + +[[HTTP]] +deps = ["Base64", "Dates", "IniFile", "MbedTLS", "Sockets"] +git-tree-sha1 = "5c49dab19938b119fe204fd7d7e8e174f4e9c68b" +uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" +version = "0.8.8" + +[[IniFile]] +deps = ["Test"] +git-tree-sha1 = "098e4d2c533924c921f9f9847274f2ad89e018b8" +uuid = "83e8ac13-25f8-5344-8a64-a9f2b223428f" +version = "0.5.0" [[InteractiveUtils]] -deps = ["Markdown"] +deps = ["LinearAlgebra", "Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[Ipopt]] -deps = ["BinaryProvider", "Compat", "Libdl", "MathOptInterface", "MathProgBase"] -git-tree-sha1 = "da2baaaf4b7ad386aab321c678028ddcc87ef348" +deps = ["BinaryProvider", "Libdl", "LinearAlgebra", "MathOptInterface", "MathProgBase"] +git-tree-sha1 = "ffc29b65db22ccb31108bf09e1394868efded345" uuid = "b6b21f68-93f8-5de0-b562-5493be1d77c9" -version = "0.5.4" +version = "0.6.1" [[IterTools]] -deps = ["SparseArrays", "Test"] -git-tree-sha1 = "79246285c43602384e6f1943b3554042a3712056" +git-tree-sha1 = "05110a2ab1fc5f932622ffea2a003221f4782c18" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.1.1" +version = "1.3.0" [[JSON]] -deps = ["Dates", "Distributed", "Mmap", "Sockets", "Test", "Unicode"] -git-tree-sha1 = "1f7a25b53ec67f5e9422f1f551ee216503f4a0fa" +deps = ["Dates", "Mmap", "Parsers", "Unicode"] +git-tree-sha1 = "b34d7cef7b337321e97d22242c3c2b91f476748e" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.20.0" +version = "0.21.0" + +[[JSONSchema]] +deps = ["BinaryProvider", "HTTP", "JSON"] +git-tree-sha1 = "b0a7f9328967df5213691d318a03cf70ea8c76b1" +uuid = "7d188eb4-7ad8-530c-ae41-71a32a6d4692" +version = "0.2.0" [[JuMP]] deps = ["Calculus", "DataStructures", "ForwardDiff", "LinearAlgebra", "MathOptInterface", "NaNMath", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "5df42febdee8ac7db9de66c712e439a6ff06459d" +git-tree-sha1 = "ba7f96010ed290d77d5c941c32e5df107ca688a4" uuid = "4076af6c-e467-56ae-b986-b466b2749572" -version = "0.19.1" +version = "0.20.1" [[LearnBase]] deps = ["LinearAlgebra", "SparseArrays", "StatsBase", "Test"] @@ -159,20 +203,19 @@ uuid = "66a33bbf-0c2b-5fc8-a008-9da813334f0a" version = "0.5.1" [[MappedArrays]] -deps = ["Test"] -git-tree-sha1 = "923441c5ac942b60bd3a842d5377d96646bcbf46" +git-tree-sha1 = "e2a02fe7ee86a10c707ff1756ab1650b40b140bb" uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.2.1" +version = "0.2.2" [[Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[MathOptInterface]] -deps = ["Compat", "Unicode"] -git-tree-sha1 = "5d3de69c9220610d0336ab45d3eb8b6ac7a7c807" +deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "JSON", "JSONSchema", "LinearAlgebra", "MutableArithmetics", "OrderedCollections", "SparseArrays", "Test", "Unicode"] +git-tree-sha1 = "d52d0671560f209b8a4604e7267d1f76ceae1f23" uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" -version = "0.8.4" +version = "0.9.9" [[MathProgBase]] deps = ["Compat"] @@ -180,6 +223,12 @@ git-tree-sha1 = "3bf2e534e635df810e5f4b4f1a8b6de9004a0d53" uuid = "fdba3010-5040-5b88-9595-932c9decdf73" version = "0.7.7" +[[MbedTLS]] +deps = ["BinaryProvider", "Dates", "Distributed", "Libdl", "Random", "Sockets", "Test"] +git-tree-sha1 = "2d94286a9c2f52c63a16146bb86fd6cdfbf677c6" +uuid = "739be429-bea8-5141-9913-cc70e7f3736d" +version = "0.6.8" + [[Memento]] deps = ["Dates", "Distributed", "JSON", "Serialization", "Sockets", "Syslogs", "Test", "TimeZones", "UUIDs"] git-tree-sha1 = "090463b13da88689e5eae6468a6f531a21392175" @@ -187,31 +236,35 @@ uuid = "f28f55f0-a522-5efc-85c2-fe41dfb9b2d9" version = "0.12.1" [[Missings]] -deps = ["SparseArrays", "Test"] -git-tree-sha1 = "f0719736664b4358aa9ec173077d4285775f8007" +deps = ["DataAPI"] +git-tree-sha1 = "de0a5ce9e5289f27df672ffabef4d1e5861247d5" uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "0.4.1" +version = "0.4.3" [[Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[Mocking]] -deps = ["Compat", "Dates"] -git-tree-sha1 = "4bf69aaf823b119b034e091e16b18311aa191663" +git-tree-sha1 = "bd2623f8b728af988d2afec53d611acb621f3bc4" uuid = "78c3b35d-d492-501b-9361-3d52fe80e533" -version = "0.5.7" +version = "0.7.0" + +[[MutableArithmetics]] +deps = ["LinearAlgebra", "SparseArrays", "Test"] +git-tree-sha1 = "3633be1762670398f7bfdd62fed3f218f025f240" +uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" +version = "0.2.0" [[NaNMath]] -deps = ["Compat"] -git-tree-sha1 = "ce3b85e484a5d4c71dd5316215069311135fa9f2" +git-tree-sha1 = "928b8ca9b2791081dc71a51c55347c27c618760f" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "0.3.2" +version = "0.3.3" [[NearestNeighbors]] -deps = ["Distances", "LinearAlgebra", "Mmap", "StaticArrays", "Test"] -git-tree-sha1 = "f47c5d97cf9a8caefa47e9fa9d99d8fda1a65154" +deps = ["Distances", "StaticArrays"] +git-tree-sha1 = "8bc6180f328f3c0ea2663935db880d34c57d6eae" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.3" +version = "0.4.4" [[OrderedCollections]] deps = ["Random", "Serialization", "Test"] @@ -221,9 +274,15 @@ version = "1.1.0" [[PDMats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "SuiteSparse", "Test"] -git-tree-sha1 = "8b68513175b2dc4023a564cb0e917ce90e74fd69" +git-tree-sha1 = "035f8d60ba2a22cb1d2580b1e0e5ce0cb05e4563" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.9.7" +version = "0.9.10" + +[[Parsers]] +deps = ["Dates", "Test"] +git-tree-sha1 = "0139ba59ce9bc680e2925aec5b7db79065d60556" +uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +version = "0.3.10" [[Pkg]] deps = ["Dates", "LibGit2", "Markdown", "Printf", "REPL", "Random", "SHA", "UUIDs"] @@ -235,9 +294,9 @@ uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" [[QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "389fd27b958a33df5234772cc464b663b208273d" +git-tree-sha1 = "dc84e810393cfc6294248c9032a9cdacc14a3db4" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.0.4" +version = "2.3.1" [[REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets"] @@ -254,10 +313,10 @@ uuid = "189a3867-3050-52da-a836-e630ba90ab69" version = "0.2.0" [[Rmath]] -deps = ["BinaryProvider", "Libdl", "Random", "Statistics", "Test"] -git-tree-sha1 = "9a6c758cdf73036c3239b0afbea790def1dabff9" +deps = ["BinaryProvider", "Libdl", "Random", "Statistics"] +git-tree-sha1 = "2bbddcb984a1d08612d0c4abb5b4774883f6fa98" uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.5.0" +version = "0.6.0" [[SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" @@ -283,32 +342,32 @@ deps = ["LinearAlgebra", "Random"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[SpecialFunctions]] -deps = ["BinDeps", "BinaryProvider", "Libdl", "Test"] -git-tree-sha1 = "0b45dc2e45ed77f445617b99ff2adf0f5b0f23ea" +deps = ["BinDeps", "BinaryProvider", "Libdl"] +git-tree-sha1 = "3bdd374b6fd78faf0119b8c5d538788dbf910c6e" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "0.7.2" +version = "0.8.0" [[StaticArrays]] -deps = ["InteractiveUtils", "LinearAlgebra", "Random", "Statistics", "Test"] -git-tree-sha1 = "3841b39ed5f047db1162627bf5f80a9cd3e39ae2" +deps = ["LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "5a3bcb6233adabde68ebc97be66e95dcb787424c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "0.10.3" +version = "0.12.1" [[Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" [[StatsBase]] -deps = ["DataStructures", "LinearAlgebra", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics"] -git-tree-sha1 = "8a0f4b09c7426478ab677245ab2b0b68552143c7" +deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics"] +git-tree-sha1 = "c53e809e63fe5cf5de13632090bc3520649c9950" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.30.0" +version = "0.32.0" [[StatsFuns]] -deps = ["Rmath", "SpecialFunctions", "Test"] -git-tree-sha1 = "b3a4e86aa13c732b8a8c0ba0c3d3264f55e6bb3e" +deps = ["Rmath", "SpecialFunctions"] +git-tree-sha1 = "79982835d2ff3970685cb704500909c94189bde9" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "0.8.0" +version = "0.9.3" [[SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "SparseArrays"] @@ -326,9 +385,15 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[TimeZones]] deps = ["Dates", "EzXML", "Mocking", "Printf", "Serialization", "Unicode"] -git-tree-sha1 = "859bfc1832ea52e413c96fa5c92130516db62bdb" +git-tree-sha1 = "29c7ae3f50f291358043e21db47b3e1a516df891" uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" -version = "0.9.1" +version = "0.10.3" + +[[TranscodingStreams]] +deps = ["Random", "Test"] +git-tree-sha1 = "7c53c35547de1c5b9d46a4797cf6d8253807108c" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.9.5" [[URIParser]] deps = ["Test", "Unicode"] @@ -337,7 +402,7 @@ uuid = "30578b45-9adc-5946-b283-645ec420af67" version = "0.4.0" [[UUIDs]] -deps = ["Random", "SHA"] +deps = ["Random"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" [[Unicode]] diff --git a/Project.toml b/Project.toml index 1daa18d..b8f02c8 100644 --- a/Project.toml +++ b/Project.toml @@ -1,7 +1,7 @@ name = "SVDD" uuid = "83536b18-e0df-11e8-1e3f-f991e449cee4" authors = ["Holger Trittenbach", "Adrian Englhardt"] -version = "0.3.0" +version = "0.4.0" [deps] Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" diff --git a/test/classifiers/classifier_svdd_neg_eps_test.jl b/test/classifiers/classifier_svdd_neg_eps_test.jl index 1d42eda..b6ef672 100644 --- a/test/classifiers/classifier_svdd_neg_eps_test.jl +++ b/test/classifiers/classifier_svdd_neg_eps_test.jl @@ -39,7 +39,7 @@ actual = SVDD.predict(svdd_neg, dummy_data) - @test_broken expected ≈ actual + @test expected ≈ actual @test sum(actual .> 0) == sum(labels .== :outlier) end diff --git a/test/classifiers/classifier_svdd_neg_test.jl b/test/classifiers/classifier_svdd_neg_test.jl index db8c022..a170423 100644 --- a/test/classifiers/classifier_svdd_neg_test.jl +++ b/test/classifiers/classifier_svdd_neg_test.jl @@ -39,7 +39,7 @@ actual = SVDD.predict(svdd_neg, dummy_data) - @test_broken expected ≈ actual + @test expected ≈ actual @test sum(actual .> 0) == sum(labels .== :outlier) end