{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":468752490,"defaultBranch":"master","name":"scrnaseq_processing_seurat","ownerLogin":"epigen","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2022-03-11T13:01:17.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/3911278?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1726239682.0","currentOid":""},"activityList":{"items":[{"before":"0d0763e94068ebd89dac8833b8e8540e1c24ec5b","after":"30514ef00e107a79b6cc1ecb0d7b89e7a07d2dd4","ref":"refs/heads/master","pushedAt":"2024-09-13T15:00:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"update README","shortMessageHtmlLink":"update README"}},{"before":"b51b90a8e4ed528eb05a472395378406f72c3539","after":"0d0763e94068ebd89dac8833b8e8540e1c24ec5b","ref":"refs/heads/master","pushedAt":"2024-09-13T14:54:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"adapt to Snakemake 8; move env, config, annot export into the result folder to be self-contained","shortMessageHtmlLink":"adapt to Snakemake 8; move env, config, annot export into the result …"}},{"before":"89f12b829890e72335ecfc34081b9c7037a96268","after":"b51b90a8e4ed528eb05a472395378406f72c3539","ref":"refs/heads/master","pushedAt":"2024-02-23T13:33:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"minor fix","shortMessageHtmlLink":"minor fix"}},{"before":"af2bafa40f0bbc4fc185b04d63a8413445ba2e57","after":"89f12b829890e72335ecfc34081b9c7037a96268","ref":"refs/heads/master","pushedAt":"2024-02-21T13:53:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"rerun example without small cell types","shortMessageHtmlLink":"rerun example without small cell types"}},{"before":"10367867e5057acb7326bcbfca832d946174c5fe","after":"af2bafa40f0bbc4fc185b04d63a8413445ba2e57","ref":"refs/heads/master","pushedAt":"2024-02-19T13:42:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"fix README typo","shortMessageHtmlLink":"fix README typo"}},{"before":"a639cddcb1751aba1be62545dfbd5a6350e103fe","after":"10367867e5057acb7326bcbfca832d946174c5fe","ref":"refs/heads/master","pushedAt":"2024-02-19T13:31:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"add DOI and CITATION.cff","shortMessageHtmlLink":"add DOI and CITATION.cff"}},{"before":"b3f326417bd79d98f66f98ba5913c07adbea490e","after":"a639cddcb1751aba1be62545dfbd5a6350e103fe","ref":"refs/heads/master","pushedAt":"2024-02-19T12:16:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"update README","shortMessageHtmlLink":"update README"}},{"before":"c1428e2dda689fa26bae4f18b44b39703dd42023","after":"b3f326417bd79d98f66f98ba5913c07adbea490e","ref":"refs/heads/master","pushedAt":"2024-02-19T12:07:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"update config REAMDE","shortMessageHtmlLink":"update config REAMDE"}},{"before":"c96d6b8eb5b3a9fb7293e1fd7247f2a256e0bade","after":"c1428e2dda689fa26bae4f18b44b39703dd42023","ref":"refs/heads/master","pushedAt":"2024-02-19T11:53:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"doc cosmetics","shortMessageHtmlLink":"doc cosmetics"}},{"before":"4955fe0b1aa792a417002c5886bde7ddfb2fa88d","after":"c96d6b8eb5b3a9fb7293e1fd7247f2a256e0bade","ref":"refs/heads/master","pushedAt":"2024-02-19T11:50:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"add comparison visualization","shortMessageHtmlLink":"add comparison visualization"}},{"before":"b631038ba77833b3caa9182a4ddfb32aea12fad7","after":"4955fe0b1aa792a417002c5886bde7ddfb2fa88d","ref":"refs/heads/master","pushedAt":"2024-02-19T11:24:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"update documentation #19","shortMessageHtmlLink":"update documentation <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2134341329\" data-permission-text=\"Title is private\" data-url=\"https://github.com/epigen/scrnaseq_processing_seurat/issues/19\" data-hovercard-type=\"issue\" data-hovercard-url=\"/epigen/scrnaseq_processing_seurat/issues/19/hovercard\" href=\"https://github.com/epigen/scrnaseq_processing_seurat/issues/19\">#19</a>"}},{"before":"ee807a60b46eaa12236e7587c6cc8c5119ef3ede","after":"b631038ba77833b3caa9182a4ddfb32aea12fad7","ref":"refs/heads/master","pushedAt":"2024-02-16T14:25:34.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"handle exception of discrete metadata in plots","shortMessageHtmlLink":"handle exception of discrete metadata in plots"}},{"before":"3ce524b0e10c8fd8cd5ceeee2a41e0828c306e79","after":"ee807a60b46eaa12236e7587c6cc8c5119ef3ede","ref":"refs/heads/master","pushedAt":"2024-02-16T13:00:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"fix minor bugs and add example data","shortMessageHtmlLink":"fix minor bugs and add example data"}},{"before":"e47124eecf957e17848738b3bb82434a5e57a796","after":"3ce524b0e10c8fd8cd5ceeee2a41e0828c306e79","ref":"refs/heads/master","pushedAt":"2024-02-15T10:55:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"fix HVF bug","shortMessageHtmlLink":"fix HVF bug"}},{"before":"49cbac535efeecb9d0cb306d694cfc36cfd9ccbd","after":"e47124eecf957e17848738b3bb82434a5e57a796","ref":"refs/heads/master","pushedAt":"2024-02-14T16:39:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"update normalization sctransform to flavor v2 #5","shortMessageHtmlLink":"update normalization sctransform to flavor v2 <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1203489958\" data-permission-text=\"Title is private\" data-url=\"https://github.com/epigen/scrnaseq_processing_seurat/issues/5\" data-hovercard-type=\"issue\" data-hovercard-url=\"/epigen/scrnaseq_processing_seurat/issues/5/hovercard\" href=\"https://github.com/epigen/scrnaseq_processing_seurat/issues/5\">#5</a>"}},{"before":"a47dcd852ad4caf18b3409f73dd95612428c7720","after":"49cbac535efeecb9d0cb306d694cfc36cfd9ccbd","ref":"refs/heads/master","pushedAt":"2024-02-14T15:02:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"attempt based dynamic memory for data intense rules #12","shortMessageHtmlLink":"attempt based dynamic memory for data intense rules <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2041737695\" data-permission-text=\"Title is private\" data-url=\"https://github.com/epigen/scrnaseq_processing_seurat/issues/12\" data-hovercard-type=\"issue\" data-hovercard-url=\"/epigen/scrnaseq_processing_seurat/issues/12/hovercard\" href=\"https://github.com/epigen/scrnaseq_processing_seurat/issues/12\">#12</a>"}},{"before":"f66dda3f480356d4a5512468bd6014ff052eaeaf","after":"a47dcd852ad4caf18b3409f73dd95612428c7720","ref":"refs/heads/master","pushedAt":"2024-02-14T13:35:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"extend gRNA and KO assignment functionality #11","shortMessageHtmlLink":"extend gRNA and KO assignment functionality <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2041729527\" data-permission-text=\"Title is private\" data-url=\"https://github.com/epigen/scrnaseq_processing_seurat/issues/11\" data-hovercard-type=\"issue\" data-hovercard-url=\"/epigen/scrnaseq_processing_seurat/issues/11/hovercard\" href=\"https://github.com/epigen/scrnaseq_processing_seurat/issues/11\">#11</a>"}},{"before":"7efcd1f2518259568f6c2fd9f60c52aa306f6fea","after":"f66dda3f480356d4a5512468bd6014ff052eaeaf","ref":"refs/heads/master","pushedAt":"2024-02-14T11:11:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"improve pseudobulking #18","shortMessageHtmlLink":"improve pseudobulking <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2133899681\" data-permission-text=\"Title is private\" data-url=\"https://github.com/epigen/scrnaseq_processing_seurat/issues/18\" data-hovercard-type=\"issue\" data-hovercard-url=\"/epigen/scrnaseq_processing_seurat/issues/18/hovercard\" href=\"https://github.com/epigen/scrnaseq_processing_seurat/issues/18\">#18</a>"}},{"before":"8bb337fad298d8eab98e61f942f90fe476a32bc7","after":"7efcd1f2518259568f6c2fd9f60c52aa306f6fea","ref":"refs/heads/master","pushedAt":"2024-02-13T16:28:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"add pseudobulking functionality #7","shortMessageHtmlLink":"add pseudobulking functionality <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1824558641\" data-permission-text=\"Title is private\" data-url=\"https://github.com/epigen/scrnaseq_processing_seurat/issues/7\" data-hovercard-type=\"issue\" data-hovercard-url=\"/epigen/scrnaseq_processing_seurat/issues/7/hovercard\" href=\"https://github.com/epigen/scrnaseq_processing_seurat/issues/7\">#7</a>"}},{"before":"d7bf7e102b3311cc82e7f6165c0e6ecae67f129d","after":"8bb337fad298d8eab98e61f942f90fe476a32bc7","ref":"refs/heads/master","pushedAt":"2024-02-13T14:04:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"cluster heatmaps and improve coloring #4","shortMessageHtmlLink":"cluster heatmaps and improve coloring <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1196177694\" data-permission-text=\"Title is private\" data-url=\"https://github.com/epigen/scrnaseq_processing_seurat/issues/4\" data-hovercard-type=\"issue\" data-hovercard-url=\"/epigen/scrnaseq_processing_seurat/issues/4/hovercard\" href=\"https://github.com/epigen/scrnaseq_processing_seurat/issues/4\">#4</a>"}},{"before":"319369c16d97ea3a320bb5033ee0d3810a207756","after":"d7bf7e102b3311cc82e7f6165c0e6ecae67f129d","ref":"refs/heads/master","pushedAt":"2024-02-13T13:14:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"restructure results and plots with minor improvements #16 #6 #14","shortMessageHtmlLink":"restructure results and plots with minor improvements <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2044079755\" data-permission-text=\"Title is private\" data-url=\"https://github.com/epigen/scrnaseq_processing_seurat/issues/16\" data-hovercard-type=\"issue\" data-hovercard-url=\"/epigen/scrnaseq_processing_seurat/issues/16/hovercard\" href=\"https://github.com/epigen/scrnaseq_processing_seurat/issues/16\">#16</a> <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1599703932\" data-permission-text=\"Title is private\" data-url=\"https://github.com/epigen/scrnaseq_processing_seurat/issues/6\" data-hovercard-type=\"issue\" data-hovercard-url=\"/epigen/scrnaseq_processing_seurat/issues/6/hovercard\" href=\"https://github.com/epigen/scrnaseq_processing_seurat/issues/6\">#6</a> <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2043956916\" data-permission-text=\"Title is private\" data-url=\"https://github.com/epigen/scrnaseq_processing_seurat/issues/14\" data-hovercard-type=\"issue\" data-hovercard-url=\"/epigen/scrnaseq_processing_seurat/issues/14/hovercard\" href=\"https://github.com/epigen/scrnaseq_processing_seurat/issues/14\">#14</a>"}},{"before":"e73d6650ea575f729440c107fd5d1fbc8c9b5c38","after":"319369c16d97ea3a320bb5033ee0d3810a207756","ref":"refs/heads/master","pushedAt":"2024-02-12T16:49:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"restructuring results and plots #16","shortMessageHtmlLink":"restructuring results and plots <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2044079755\" data-permission-text=\"Title is private\" data-url=\"https://github.com/epigen/scrnaseq_processing_seurat/issues/16\" data-hovercard-type=\"issue\" data-hovercard-url=\"/epigen/scrnaseq_processing_seurat/issues/16/hovercard\" href=\"https://github.com/epigen/scrnaseq_processing_seurat/issues/16\">#16</a>"}},{"before":"b913e91b3a0a658fe81e4788965607c6b9951997","after":"e73d6650ea575f729440c107fd5d1fbc8c9b5c38","ref":"refs/heads/master","pushedAt":"2024-02-08T15:41:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"improveread and write performance #15","shortMessageHtmlLink":"improveread and write performance <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2044048388\" data-permission-text=\"Title is private\" data-url=\"https://github.com/epigen/scrnaseq_processing_seurat/issues/15\" data-hovercard-type=\"issue\" data-hovercard-url=\"/epigen/scrnaseq_processing_seurat/issues/15/hovercard\" href=\"https://github.com/epigen/scrnaseq_processing_seurat/issues/15\">#15</a>"}},{"before":"ef922ea5efe3828185cdacd0746f685579f84827","after":"b913e91b3a0a658fe81e4788965607c6b9951997","ref":"refs/heads/master","pushedAt":"2023-12-14T13:11:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"make metadata parameter in rule prepare to avoid cyclic graph in case of empty metadata field in annot #10","shortMessageHtmlLink":"make metadata parameter in rule prepare to avoid cyclic graph in case…"}},{"before":"b138bc47e3c31388b2aedd8f21c1bfe49c85de59","after":"ef922ea5efe3828185cdacd0746f685579f84827","ref":"refs/heads/master","pushedAt":"2023-07-27T09:46:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"Create LICENSE","shortMessageHtmlLink":"Create LICENSE"}},{"before":"d74bb7ac8d38bba0dc0ff76508dc71229764ff74","after":"b138bc47e3c31388b2aedd8f21c1bfe49c85de59","ref":"refs/heads/master","pushedAt":"2023-07-27T09:45:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sreichl","name":"Stephan Reichl","path":"/sreichl","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53785552?s=80&v=4"},"commit":{"message":"Delete LICENSE","shortMessageHtmlLink":"Delete LICENSE"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0xM1QxNTowMDo1Mi4wMDAwMDBazwAAAAS1nIzM","endCursor":"Y3Vyc29yOnYyOpK7MjAyMy0wNy0yN1QwOTo0NTo1Ny4wMDAwMDBazwAAAANeRIud"}},"title":"Activity · epigen/scrnaseq_processing_seurat"}