From 060a272590cf4349b6a6bf2ceed06608ea1b3d9d Mon Sep 17 00:00:00 2001 From: Chris Hartgerink Date: Wed, 31 Jan 2024 18:09:18 +0100 Subject: [PATCH 1/4] Update README.md --- README.md | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/README.md b/README.md index c8b148f..8795124 100644 --- a/README.md +++ b/README.md @@ -54,6 +54,18 @@ episoap::list_templates() #> [1] "transmissibility" ``` +### System dependencies + +You may need to install system dependencies: + +``` +# macOS +brew install libsodium + +# Linux (Debian based) +apt install libsodium-dev +``` + ## Related projects This project has some overlap with other R packages: From f050457e94fe32267d184a09f63e1d8b49c9062e Mon Sep 17 00:00:00 2001 From: Chris Hartgerink Date: Wed, 31 Jan 2024 18:26:12 +0100 Subject: [PATCH 2/4] Add `cmake` --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 8795124..0dcbedf 100644 --- a/README.md +++ b/README.md @@ -60,10 +60,10 @@ You may need to install system dependencies: ``` # macOS -brew install libsodium +brew install libsodium cmake # Linux (Debian based) -apt install libsodium-dev +apt install libsodium-dev cmake ``` ## Related projects From 236463e963c7c268809ce4a869bf8a78259a9665 Mon Sep 17 00:00:00 2001 From: Chris Hartgerink Date: Thu, 1 Feb 2024 12:23:39 +0100 Subject: [PATCH 3/4] Add system dependencies to report information --- .../templates/transmissibility/skeleton/skeleton.Rmd | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/inst/rmarkdown/templates/transmissibility/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/transmissibility/skeleton/skeleton.Rmd index 92c724d..dfd02e9 100644 --- a/inst/rmarkdown/templates/transmissibility/skeleton/skeleton.Rmd +++ b/inst/rmarkdown/templates/transmissibility/skeleton/skeleton.Rmd @@ -241,6 +241,18 @@ dark_pink <- "#B45D75" theme_set(theme_episoap()) ``` +### System dependencies + +You may need to install system dependencies to be able to generate this report: + +```sh +# macOS +brew install libsodium cmake + +# Linux (Debian based) +apt install libsodium-dev cmake +``` + ## Importing the data To illustrate the different analyses, we use real data reporting daily numbers From 80c31d8b952a514ff58c11f85e69800ea3e77f08 Mon Sep 17 00:00:00 2001 From: Chris Hartgerink Date: Wed, 14 Feb 2024 13:03:27 +0100 Subject: [PATCH 4/4] Update inst/rmarkdown/templates/transmissibility/skeleton/skeleton.Rmd Co-authored-by: Hugo Gruson <10783929+Bisaloo@users.noreply.github.com> --- inst/rmarkdown/templates/transmissibility/skeleton/skeleton.Rmd | 2 ++ 1 file changed, 2 insertions(+) diff --git a/inst/rmarkdown/templates/transmissibility/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/transmissibility/skeleton/skeleton.Rmd index dfd02e9..61f741e 100644 --- a/inst/rmarkdown/templates/transmissibility/skeleton/skeleton.Rmd +++ b/inst/rmarkdown/templates/transmissibility/skeleton/skeleton.Rmd @@ -241,6 +241,7 @@ dark_pink <- "#B45D75" theme_set(theme_episoap()) ``` + ## Importing the data