From 59d010d5ffe61d6ea0fa5ff4bdaf690becb44e46 Mon Sep 17 00:00:00 2001 From: Joel Adams Date: Tue, 7 Apr 2026 16:05:51 +0100 Subject: [PATCH 1/5] add sphinx tabs --- docs/conf.py | 1 + pyproject.toml | 1 + 2 files changed, 2 insertions(+) diff --git a/docs/conf.py b/docs/conf.py index 29f9706..a7e4d87 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -50,6 +50,7 @@ "myst_nb", "sphinx_copybutton", "sphinx_togglebutton", + "sphinx_design", ] source_suffix = {".rst": "restructuredtext", ".md": "myst-nb"} diff --git a/pyproject.toml b/pyproject.toml index 001c2d8..98790c2 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -66,6 +66,7 @@ docs = [ "pint-xarray", "myst-nb", "sphinx-copybutton", + "sphinx-design>=0.7.0", "pooch>=1.8.2", "tqdm", ] From 1f6b846c3a5c8597f74ff9d2e9ab3e8af2a5a22f Mon Sep 17 00:00:00 2001 From: Joel Adams Date: Tue, 7 Apr 2026 16:05:56 +0100 Subject: [PATCH 2/5] Add Python and uv guide --- docs/getting_started.md | 117 +++++++++++++++++++++++++++++++++++++++- 1 file changed, 116 insertions(+), 1 deletion(-) diff --git a/docs/getting_started.md b/docs/getting_started.md index 177d9b1..851dbb8 100644 --- a/docs/getting_started.md +++ b/docs/getting_started.md @@ -7,6 +7,8 @@ To install this package, ensure that you are using one of the supported Python versions [![Supported Python versions](https://img.shields.io/pypi/pyversions/sdf-xarray.svg)](https://github.com/epochpic/sdf-xarray) ``` +There are several ways in which you can install . If you are unfamiliar with Python, [follow this guide](#new-to-python). If you are already familiar with Python and `pip` then you can install this using the following. + Install sdf-xarray from PyPI with: ```bash @@ -23,7 +25,7 @@ pip install . ## Interaction -There are two main ways to load EPOCH SDF files into xarray objects: using the dedicated +There are two main ways to load [EPOCH SDF files](https://epochpic.github.io/documentation/visualising_output.html) into xarray objects: using the dedicated functions or using the standard interface with our custom engine. For examples of how to use these functions see [](./key_functionality.md#loading-sdf-files). @@ -59,3 +61,116 @@ If you prefer using the native functions, you can use the is installed on your system, if you are having issues with it reading files, you might need to pass the parameter `engine=sdf_engine` when calling any of the above xarray functions. + +## New to Python? + +### Installing uv + +We recommend [installing uv](https://docs.astral.sh/uv/getting-started/installation/) which is a command line tool that can install both Python versions and packages. This tool is the current industry standard and additionally has the benefit of being significantly faster than other tools. + +`````{tab-set} +````{tab-item} Linux/MacOS +```bash +curl -LsSf https://astral.sh/uv/install.sh | sh +``` +```` + +````{tab-item} Windows +```powershell +powershell -ExecutionPolicy ByPass -c "irm https://astral.sh/uv/install.ps1 | iex" +``` +You might need to change the [execution policy](https://learn.microsoft.com/en-us/powershell/module/microsoft.powershell.core/about/about_execution_policies?view=powershell-7.4#powershell-execution-policies) to allow running a script from the internet. +```` +````` + +You can then check `uv` is correctly installed by running: + +```bash +uv --version +``` + +### Installing Python + +If Python is already installed on your system then `uv` will detect and use it. If you don't have python already installed on your machine you can use `uv` to install it: + +```console +uv python install 3.14 +``` +Once installed, it should be possible to run Python using + +```bash +python3.14 --version +``` + +### Setting up a virtual environment + +Now that you've installed `uv` and have a supported Python version you need to create a [virtual environment](https://docs.astral.sh/uv/reference/cli/#uv-venv). You need to do this because Python doesn't allow you to install libraries globally on your system. From a folder of your choosing run the following command to create a subfolder called `.venv` containing all the Python libraries you install. + +```bash +uv venv +``` + +Depending on your operating system you'll need to follow the activation command that appears after running `uv venv`. This will tell Python to use the libraries installed in this package. + +### Installing sdf-xarray + +Finally we can install to the `venv` using the following command. Any additional packages that can be installed using `pip` can also be installed using this method. + +```bash +uv pip install sdf-xarray +``` + +### Getting an error about a missing `CMAKE_C_COMPILER`? + +Are you getting an error that looks like this? + +```bash +$ uv pip install sdf-xarray +Resolved 16 packages in 293ms + x Failed to build `sdf-xarray==0.7.0` + |-> The build backend returned an error + `-> Call to `scikit_build_core.build.build_wheel` failed (exit status: 1) + + [stdout] + *** scikit-build-core 0.12.2 using CMake 4.3.1 (wheel) + *** Configuring CMake... + loading initial cache file /tmp/tmp8ch254_2/build/CMakeInit.txt + -- Configuring incomplete, errors occurred! + + [stderr] + CMake Error at + /nix/tmp/debug-tools/.cache/uv/builds-v0/.tmpa3v1oF/lib/python3.14/site-packages/cmake/data/share/cmake-4.3/Modules/CMakeDetermineCCompiler.cmake:48 + (message): + Could not find the compiler specified in the environment variable CC: + + cc -pthread. + Call Stack (most recent call first): + CMakeLists.txt:3 (project) + + + CMake Error: CMAKE_C_COMPILER not set, after EnableLanguage + + *** CMake configuration failed + + hint: This usually indicates a problem with the package or the build environment. +``` + +Don't panic, this error means you've not installed a `C` compiler onto your computer. + +````{tab-set} +```{tab-item} Linux +If you're on a fresh or recent Linux install then there's a good chance you might be missing a it, you can remedy this by running `sudo apt install build-essential` on Debian-based Linux systems such as Ubuntu. +``` + +```{tab-item} MacOS +Make sure you've installed the [Command Line Tools package](https://developer.apple.com/documentation/xcode/installing-the-command-line-tools/#Install-the-Command-Line-Tools-package-in-Terminal). +``` + +```{tab-item} Windows +If you've encountered this error then I have no idea... But I strongly recommending installing [Windows Subsystem for Linux](https://learn.microsoft.com/en-us/windows/wsl/install) and running a mini Ubuntu install on your machine instead of fighting windows. +``` +```` + +### How do I run my Python scripts? + +As long as you've "activated" your `venv` you can run a Python script from anywhere on your computer. From 6639aefd5ea4a67e1b490b723ca40b5b630e876d Mon Sep 17 00:00:00 2001 From: Joel Adams Date: Tue, 7 Apr 2026 16:06:17 +0100 Subject: [PATCH 3/5] fix broken link --- docs/key_functionality.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/key_functionality.md b/docs/key_functionality.md index 1b4a743..286d46a 100644 --- a/docs/key_functionality.md +++ b/docs/key_functionality.md @@ -199,9 +199,9 @@ ds["Electric_Field_Ex"] On top of accessing variables, you can plot these datasets using [`xarray.DataArray.epoch.plot`](project:#sdf_xarray.dataarray_accessor.EpochAccessor.plot). -This is a custom plotting routine that builds on top of +This is a custom plotting routine that builds on top of , so you keep the familiar plotting -behaviour while using conveniences (see +behaviour while using conveniences (see [here](project:#sdf_xarray.dataarray_accessor.EpochAccessor.plot) for details). Under the hood, plotting is still handled by , which means you can use the full API to customise your figure. 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which is a command line tool that can install both Python versions and packages. This tool is the current industry standard and additionally has the benefit of being significantly faster than other tools. +We recommend [installing uv](https://docs.astral.sh/uv/getting-started/installation/) which is a command line tool that can install both Python versions and packages. This tool is widely used in the Python community and is significantly faster than other tools that do the same. `````{tab-set} ````{tab-item} Linux/MacOS