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Track hub for C2C12 LR-Split-seq paper

This UCSC Genome Browser track hub link is used in our publication (in particular, Fig. 4C).

It will display the following:

  1. snATAC-seq pseudobulk peaks across 18 clusters (bigwigs)
  2. Merged psuedobulk snATAC-seq peaks across all clusters (bigBeg)
  3. TSS regions called from LR-Split-seq (bigBed)
  4. ENCODE cCREs (bigBed)
  5. LR-Split-seq reads across 7 clusters, used to call TSSs (bams and bam indices)
  6. Comprehensive set of GENCODE vM21 (bigBed)

URL to paste into My Hubs: https://raw.githubusercontent.com/erebboah/c2c12_trackhub/main/hub.txt

Step 1

Navigate to UCSC Genome Browser, My Data > Track Hubs (or use link above). Paste hub.txt link into My Hubs page:

Step 1

Step 2

There will be a brief message about the track hub as you are redirected to the main page. Enter in a gene, for example Tnnt2:

Step 2

Step 3

Visualize data.

Step 3

The files will be slightly out of order as they are displayed in the figure; click and drag to reorder. My browser settings are below.

Settings

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