This package provides some useful tools for ImageJ and Fiji. To install, drag the .jar file located in "dist" to your ImageJ or Fiji plugins folder.
Custom Legend: Design a legend in an independent window using a LUT of your choice and to your own specifications. This plugin is an extension of the Calibration Bar functionality.
Selection To Indices: Converts a 2D ImageJ ROI to index numbers. Enables quick transferring of an ImageJ selection to a Matlab index vector.
Indices to Selection: Converts a Matlab index vector to an ImageJ ROI. Note that the ROI will be a cloud of independent points.
False Discovery Rate: Enables pixel-wise statistical testing, with False Discovery Rate (FDR) control of Family-Wise Error Rate (FWER). If you use this plugin in a paper, please cite this publication:
Barnhill, E., Kennedy, P., Hammer, S., van Beek, E. J., Brown, C., & Roberts, N. (2013). Statistical mapping of the effect of knee extension on thigh muscle viscoelastic properties using magnetic resonance elastography. Physiological measurement, 34(12), 1675.
The Barnhill ImageJ Toolkit is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
The Barnhill ImageJ Toolkit is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY;
without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with Barnhill ImageJ Toolkit. If not, see http://www.gnu.org/licenses/ .
This code uses software from the Apache Software Foundation. The Apache Software License can be found at: http://www.apache.org/licenses/LICENSE-2.0.txt .