Rphylopars is an R package for conducting multivariate phylogenetic comparative analyses on datasets with missing observations and missing data. Rphylopars uses a fast linear-time algorithm and incorporate a variety of evolutionary models, including estimation of tree transformation parameters (Early-Burst, Ornstein-Uhlenbeck, lambda, kappa, delta) as well as the multivariate Ornstein-Uhlenbeck model.
For download information and tutorials, visit the Rphylopars wiki.
Current versions available
- master branch - 0.2.3
- devel branch - 0.2.3
- Version 0.2.2 - patch to allow a given species to have no data (previously this caused an error)
- Version 0.2.3 - patch to retain node labels (if they exist) in ancestral state reconstruction