Phylogenetic Comparative Tools for Missing Data and Within-Species Variation
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README.md

Rphylopars

Rphylopars is an R package for conducting multivariate phylogenetic comparative analyses on datasets with missing observations and missing data. Rphylopars uses a fast linear-time algorithm and incorporate a variety of evolutionary models, including estimation of tree transformation parameters (Early-Burst, Ornstein-Uhlenbeck, lambda, kappa, delta) as well as the multivariate Ornstein-Uhlenbeck model.

For download information and tutorials, visit the Rphylopars wiki.

Current versions available

CRAN: 0.2.1

GitHub:

  • master branch - 0.2.3
  • devel branch - 0.2.3

Version notes

  • Version 0.2.2 - patch to allow a given species to have no data (previously this caused an error)
  • Version 0.2.3 - patch to retain node labels (if they exist) in ancestral state reconstruction