Multiple Sequence Alignment Ontology (MSAOnt) population software
Python
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LICENSE Initial commit Mar 23, 2016
README.md Added DOI to README. May 2, 2016
msaont.py Updated README. Added command line arguments. Apr 18, 2016

README.md

DOI #MSAOnt Population Software

This software generates an instance of the multiple sequence alignment ontology (MSAOnt) from an aligned fasta or cma file.

Requires Python version 2.7

License: MIT

#Python dependencies

Please ensure the following Python packages are installed via pip:

  • Biopython <http://biopython.org/wiki/Main_Page>
  • RDFLib <https://github.com/RDFLib/rdflib>
  • progress <https://pypi.python.org/pypi/progress>
  • biocma <https://github.com/etal/biocma>

#Note

If you are populating MSAOnt with a cma file, the first entry must be an aligned gapless consensus sequence.