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Updated the rest of headers and copyright disclaimers.

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1 parent 11d8cb5 commit 294246ee032c8d1b8863634500f62f7beba1324c @olenz olenz committed Feb 13, 2012
Showing with 428 additions and 352 deletions.
  1. +16 −13 doc/tutorials/01-lennard_jones/scripts/blockfile_read.tcl
  2. +16 −13 doc/tutorials/01-lennard_jones/scripts/lj_functions.tcl
  3. +16 −19 doc/tutorials/01-lennard_jones/scripts/lj_tutorial.tcl
  4. +16 −14 doc/tutorials/01-lennard_jones/scripts/msd.tcl
  5. +16 −13 doc/tutorials/01-lennard_jones/scripts/rdf.tcl
  6. +16 −15 doc/tutorials/01-lennard_jones/scripts/vacf.tcl
  7. +16 −13 doc/tutorials/01-lennard_jones/solutions/blockfile_read.tcl
  8. +16 −13 doc/tutorials/01-lennard_jones/solutions/lj_functions.tcl
  9. +16 −13 doc/tutorials/01-lennard_jones/solutions/lj_tutorial.tcl
  10. +16 −13 doc/tutorials/01-lennard_jones/solutions/msd.tcl
  11. +16 −13 doc/tutorials/01-lennard_jones/solutions/rdf.tcl
  12. +17 −16 doc/tutorials/01-lennard_jones/solutions/vacf.tcl
  13. +16 −15 doc/tutorials/01-lennard_jones/solutions/vacf_vec.tcl
  14. +1 −1 maintainer/espresso-2.1.2j.ebuild
  15. +2 −1 maintainer/files_with_header.sh
  16. +28 −11 maintainer/find_missing_header.sh
  17. +9 −12 maintainer/update_header.sh
  18. +18 −16 packages/mbtools/doc/analysis.html
  19. +18 −18 packages/mbtools/doc/install.html
  20. +18 −18 packages/mbtools/doc/maintcl.html
  21. +18 −18 packages/mbtools/doc/manual.html
  22. +18 −18 packages/mbtools/doc/mmsg.html
  23. +18 −18 packages/mbtools/doc/overview.html
  24. +18 −18 packages/mbtools/doc/system_generation.html
  25. +18 −18 packages/mbtools/doc/utils.html
  26. +17 −0 scripts/dielectrics.tcl
  27. +17 −1 testsuite/dielectric_test.tcl
  28. +1 −1 testsuite/iccp3m.tcl
@@ -1,17 +1,20 @@
-#!/bin/sh
-# tricking... the line after a these comments are interpreted as standard shell script \
-exec $ESPRESSO_SOURCE/Espresso $0 $*
+# Copyright (C) 2010,2011,2012 The ESPResSo project
+#
+# This file is part of ESPResSo.
+#
+# ESPResSo is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# ESPResSo is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program. If not, see <http://www.gnu.org/licenses/>.
#
-# This file is part of the ESPResSo distribution (http://www.espresso.mpg.de).
-# It is therefore subject to the ESPResSo license agreement which you accepted upon receiving the distribution
-# and by which you are legally bound while utilizing this file in any form or way.
-# There is NO WARRANTY, not even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# You should have received a copy of that license along with this program;
-# if not, refer to http://www.espresso.mpg.de/license.html where its current version can be found, or
-# write to
-# Max-Planck-Institute for Polymer Research, Theory Group.
-# Copyright (C) 2012 The ESPResSo project
-# Copyright (c) 2002-2006; all rights reserved unless otherwise stated.
#
# Offline Analysis
#
@@ -1,17 +1,20 @@
-#!/bin/sh
-# tricking... the line after a these comments are interpreted as standard shell script \
-exec $ESPRESSO_SOURCE/Espresso $0 $*
+# Copyright (C) 2010,2011,2012 The ESPResSo project
+#
+# This file is part of ESPResSo.
+#
+# ESPResSo is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# ESPResSo is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program. If not, see <http://www.gnu.org/licenses/>.
#
-# This file is part of the ESPResSo distribution (http://www.espresso.mpg.de).
-# It is therefore subject to the ESPResSo license agreement which you accepted upon receiving the distribution
-# and by which you are legally bound while utilizing this file in any form or way.
-# There is NO WARRANTY, not even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# You should have received a copy of that license along with this program;
-# if not, refer to http://www.espresso.mpg.de/license.html where its current version can be found, or
-# write to
-# Max-Planck-Institute for Polymer Research, Theory Group.
-# Copyright (C) 2012 The ESPResSo project
-# Copyright (c) 2002-2006; all rights reserved unless otherwise stated.
#############################################################
# #
# Functions (TCL procedures used in lj_tutorial ) #
@@ -1,33 +1,30 @@
-#!/bin/sh
-# tricking... the line after a these comments are interpreted as standard shell script \
-exec $ESPRESSO_SOURCE/Espresso $0 $*
+# Copyright (C) 2010,2011,2012 The ESPResSo project
+#
+# This file is part of ESPResSo.
+#
+# ESPResSo is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# ESPResSo is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program. If not, see <http://www.gnu.org/licenses/>.
#
-# This file is part of the ESPResSo distribution (http://www.espresso.mpg.de).
-# It is therefore subject to the ESPResSo license agreement which you accepted upon receiving the distribution
-# and by which you are legally bound while utilizing this file in any form or way.
-# There is NO WARRANTY, not even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# You should have received a copy of that license along with this program;
-# if not, refer to http://www.espresso.mpg.de/license.html where its current version can be found, or
-# write to
-# Max-Planck-Institute for Polymer Research, Theory Group.
-# Copyright (C) 2012 The ESPResSo project
-# Copyright (c) 2002-2006; all rights reserved unless otherwise stated.
#############################################################
# #
# Sample System Lennard Jones Liquid #
# #
-# LJ Tutorial Extented by #
-# SimBio Group, Frankfurt am Main #
-# 2007 June #
-# #
# LJ System Studied in the Book #
# Understanding Molecular Simulations #
# Frankel & Smith , 2nd Edition #
# Chapter 4, Case Study 4 #
# #
#############################################################
-
-
# Source (call) functions to be used
source lj_functions.tcl
@@ -1,17 +1,19 @@
-#!/bin/sh
-# tricking... the line after a these comments are interpreted as standard shell script \
-exec $ESPRESSO_SOURCE/Espresso $0 $*
-#
-# This file is part of the ESPResSo distribution (http://www.espresso.mpg.de).
-# It is therefore subject to the ESPResSo license agreement which you accepted upon receiving the distribution
-# and by which you are legally bound while utilizing this file in any form or way.
-# There is NO WARRANTY, not even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# You should have received a copy of that license along with this program;
-# if not, refer to http://www.espresso.mpg.de/license.html where its current version can be found, or
-# write to
-# Max-Planck-Institute for Polymer Research, Theory Group.
-# Copyright (C) 2012 The ESPResSo project
-# Copyright (c) 2002-2006; all rights reserved unless otherwise stated.
+# Copyright (C) 2010,2011,2012 The ESPResSo project
+#
+# This file is part of ESPResSo.
+#
+# ESPResSo is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# ESPResSo is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program. If not, see <http://www.gnu.org/licenses/>.
#
# Offline Analysis for Mean Square Deviation
#
@@ -1,17 +1,20 @@
-#!/bin/sh
-# tricking... the line after a these comments are interpreted as standard shell script \
-exec $ESPRESSO_SOURCE/Espresso $0 $*
+# Copyright (C) 2010,2011,2012 The ESPResSo project
+#
+# This file is part of ESPResSo.
+#
+# ESPResSo is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# ESPResSo is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program. If not, see <http://www.gnu.org/licenses/>.
#
-# This file is part of the ESPResSo distribution (http://www.espresso.mpg.de).
-# It is therefore subject to the ESPResSo license agreement which you accepted upon receiving the distribution
-# and by which you are legally bound while utilizing this file in any form or way.
-# There is NO WARRANTY, not even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# You should have received a copy of that license along with this program;
-# if not, refer to http://www.espresso.mpg.de/license.html where its current version can be found, or
-# write to
-# Max-Planck-Institute for Polymer Research, Theory Group.
-# Copyright (C) 2012 The ESPResSo project
-# Copyright (c) 2002-2006; all rights reserved unless otherwise stated.
#
# Offline Analysis for Radial Distribution Function
#
@@ -1,21 +1,22 @@
-#!/bin/sh
-# tricking... the line after a these comments are interpreted as standard shell script \
-exec $ESPRESSO_SOURCE/Espresso $0 $*
+# Copyright (C) 2010,2011,2012 The ESPResSo project
+#
+# This file is part of ESPResSo.
+#
+# ESPResSo is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# ESPResSo is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program. If not, see <http://www.gnu.org/licenses/>.
#
-# This file is part of the ESPResSo distribution (http://www.espresso.mpg.de).
-# It is therefore subject to the ESPResSo license agreement which you accepted upon receiving the distribution
-# and by which you are legally bound while utilizing this file in any form or way.
-# There is NO WARRANTY, not even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# You should have received a copy of that license along with this program;
-# if not, refer to http://www.espresso.mpg.de/license.html where its current version can be found, or
-# write to
-# Max-Planck-Institute for Polymer Research, Theory Group.
-# Copyright (C) 2012 The ESPResSo project
-# Copyright (c) 2002-2006; all rights reserved unless otherwise stated.
#
# Simple Velocity Auto-Correlation-Function; Direct Method
-# February 2007
-# by m@suzen
#
set filename "data/sim_info.dat"
set in [open "$filename" "r"]
@@ -1,17 +1,20 @@
-#!/bin/sh
-# tricking... the line after a these comments are interpreted as standard shell script \
-exec $ESPRESSO_SOURCE/Espresso $0 $*
+# Copyright (C) 2010,2011,2012 The ESPResSo project
+#
+# This file is part of ESPResSo.
+#
+# ESPResSo is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# ESPResSo is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program. If not, see <http://www.gnu.org/licenses/>.
#
-# This file is part of the ESPResSo distribution (http://www.espresso.mpg.de).
-# It is therefore subject to the ESPResSo license agreement which you accepted upon receiving the distribution
-# and by which you are legally bound while utilizing this file in any form or way.
-# There is NO WARRANTY, not even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# You should have received a copy of that license along with this program;
-# if not, refer to http://www.espresso.mpg.de/license.html where its current version can be found, or
-# write to
-# Max-Planck-Institute for Polymer Research, Theory Group.
-# Copyright (C) 2012 The ESPResSo project
-# Copyright (c) 2002-2006; all rights reserved unless otherwise stated.
#
# Offline Analysis
#
@@ -1,17 +1,20 @@
-#!/bin/sh
-# tricking... the line after a these comments are interpreted as standard shell script \
-exec $ESPRESSO_SOURCE/Espresso $0 $*
+# Copyright (C) 2010,2011,2012 The ESPResSo project
+#
+# This file is part of ESPResSo.
+#
+# ESPResSo is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# ESPResSo is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program. If not, see <http://www.gnu.org/licenses/>.
#
-# This file is part of the ESPResSo distribution (http://www.espresso.mpg.de).
-# It is therefore subject to the ESPResSo license agreement which you accepted upon receiving the distribution
-# and by which you are legally bound while utilizing this file in any form or way.
-# There is NO WARRANTY, not even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# You should have received a copy of that license along with this program;
-# if not, refer to http://www.espresso.mpg.de/license.html where its current version can be found, or
-# write to
-# Max-Planck-Institute for Polymer Research, Theory Group.
-# Copyright (C) 2012 The ESPResSo project
-# Copyright (c) 2002-2006; all rights reserved unless otherwise stated.
#############################################################
# #
# Functions (TCL procedures used in lj_tutorial ) #
@@ -1,17 +1,20 @@
-#!/bin/sh
-# tricking... the line after a these comments are interpreted as standard shell script \
-exec $ESPRESSO_SOURCE/Espresso $0 $*
+# Copyright (C) 2010,2011,2012 The ESPResSo project
+#
+# This file is part of ESPResSo.
+#
+# ESPResSo is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# ESPResSo is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program. If not, see <http://www.gnu.org/licenses/>.
#
-# This file is part of the ESPResSo distribution (http://www.espresso.mpg.de).
-# It is therefore subject to the ESPResSo license agreement which you accepted upon receiving the distribution
-# and by which you are legally bound while utilizing this file in any form or way.
-# There is NO WARRANTY, not even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# You should have received a copy of that license along with this program;
-# if not, refer to http://www.espresso.mpg.de/license.html where its current version can be found, or
-# write to
-# Max-Planck-Institute for Polymer Research, Theory Group.
-# Copyright (C) 2012 The ESPResSo project
-# Copyright (c) 2002-2006; all rights reserved unless otherwise stated.
#############################################################
# #
# Sample System Lennard Jones Liquid #
@@ -1,17 +1,20 @@
-#!/bin/sh
-# tricking... the line after a these comments are interpreted as standard shell script \
-exec $ESPRESSO_SOURCE/Espresso $0 $*
+# Copyright (C) 2010,2011,2012 The ESPResSo project
+#
+# This file is part of ESPResSo.
+#
+# ESPResSo is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# ESPResSo is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program. If not, see <http://www.gnu.org/licenses/>.
#
-# This file is part of the ESPResSo distribution (http://www.espresso.mpg.de).
-# It is therefore subject to the ESPResSo license agreement which you accepted upon receiving the distribution
-# and by which you are legally bound while utilizing this file in any form or way.
-# There is NO WARRANTY, not even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# You should have received a copy of that license along with this program;
-# if not, refer to http://www.espresso.mpg.de/license.html where its current version can be found, or
-# write to
-# Max-Planck-Institute for Polymer Research, Theory Group.
-# Copyright (C) 2012 The ESPResSo project
-# Copyright (c) 2002-2006; all rights reserved unless otherwise stated.
#
# Offline Analysis for Mean Square Deviation
#
@@ -1,17 +1,20 @@
-#!/bin/sh
-# tricking... the line after a these comments are interpreted as standard shell script \
-exec $ESPRESSO_SOURCE/Espresso $0 $*
+# Copyright (C) 2010,2011,2012 The ESPResSo project
+#
+# This file is part of ESPResSo.
+#
+# ESPResSo is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# ESPResSo is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program. If not, see <http://www.gnu.org/licenses/>.
#
-# This file is part of the ESPResSo distribution (http://www.espresso.mpg.de).
-# It is therefore subject to the ESPResSo license agreement which you accepted upon receiving the distribution
-# and by which you are legally bound while utilizing this file in any form or way.
-# There is NO WARRANTY, not even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-# You should have received a copy of that license along with this program;
-# if not, refer to http://www.espresso.mpg.de/license.html where its current version can be found, or
-# write to
-# Max-Planck-Institute for Polymer Research, Theory Group.
-# Copyright (C) 2012 The ESPResSo project
-# Copyright (c) 2002-2006; all rights reserved unless otherwise stated.
#
# Offline Analysis for Radial Distribution Function
#
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