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26 Open 151 Closed
26 Open 151 Closed
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Issues list

Fatal error: cannot create 'R_TempDir' Error in makePSOCKcluster(names = spec, ...) : Cluster setup failed. 2 of 2 workers failed to connect. Calls: simEnv ... diffuse_par -> diffuse_par -> <Anonymous> -> makePSOCKcluster Timing stopped at: 0.004 0.082 240.4 Execution halted
#188 opened Oct 27, 2023 by arijitnus
1
Can I graph a specific metabolic pathway that produces a metabolite?
#187 opened Jul 26, 2023 by Valentin-Bio
Problems with code reproduction in tutorials
#186 opened Jul 16, 2023 by lishijia13579
1
modify sihumi_test community
#185 opened Jul 9, 2023 by mmpust
Simulations taking too long
#184 opened Jun 19, 2023 by EoinV
1
Organisms will not utilize substrates
#183 opened Mar 14, 2023 by wtscott31
2
Sybil Error: needs an object of class modelorg, Matrix or matrix!
#182 opened Nov 22, 2022 by NatashaJorge
1
Manipulate reaction equations?
#180 opened Sep 16, 2022 by hannahschrenk
1
Auxotrophic example in Introduction doc
#175 opened Mar 8, 2022 by spburillo
Continue simulation at time step n
#174 opened Feb 16, 2022 by charlos1204
3
Is this line of findFeeding3rep correct?
#173 opened Jan 18, 2022 by maringos
4
Set tstep (the time (in h) per iteration) with different values does not change the simulation results.
#171 opened Sep 25, 2021 by XuejianXiong
Parallelization issue
#170 opened Jul 18, 2021 by hites77
Comparison of 'deathrate' and 'removeM'
#169 opened May 27, 2021 by zhssakura
Cell lysis
#168 opened May 27, 2021 by zhssakura
1
Parameter justification for bacarena
#167 opened May 19, 2021 by hites77
Can't add my own model readMATmod
#166 opened Apr 12, 2021 by JessicaSingh1997
6
modeling of external enzymes
#165 opened Mar 30, 2021 by jotech
3
Warnings after running some functions
#163 opened Nov 18, 2020 by maringos
Need for species selection in findRxnFlux
#162 opened Jul 14, 2020 by maringos
Need of cutoff in findfeeding3rep function
#160 opened Jun 9, 2020 by maringos
findFeeding3 function
#154 opened Dec 3, 2019 by charlos1204
Install Dependencies
#153 opened Nov 20, 2019 by maringos
5
Antibiotics
#150 opened Sep 18, 2019 by tenguzame
2
Bug in Continue functionality
#148 opened Aug 12, 2019 by maringos
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