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Env. variable to specify the path to ts-data
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scripts/xnattotransmartlink/command.sh
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@@ -1,9 +1,10 @@ |
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#!/bin/bash
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-export KETTLE_HOME="/home/transmart/transmart-data/samples/postgres/kettle-home/"
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+export TS_DATA="/home/transmart/transmart-data/"
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+export KETTLE_HOME="${TS_DATA}samples/postgres/kettle-home/"
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-sh "/home/jenkins/transmart-data/env/data-integration/kitchen.sh" \
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+sh "${TS_DATA}env/data-integration/kitchen.sh" \
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-norep=N \
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--file="/home/transmart/transmart-data/env/tranSMART-ETL/Postgres/GPL-1.0/Kettle/Kettle-ETL/create_clinical_data.kjb" \
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+-file="${TS_DATA}env/tranSMART-ETL/Postgres/GPL-1.0/Kettle/Kettle-ETL/create_clinical_data.kjb" \
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-log=load_clinical_data.log \
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-param:LOAD_TYPE=I \
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-param:COLUMN_MAP_FILE=xnat.tmm \
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