From ac9039d839d645d31b28437eea6ede3e7dce2d84 Mon Sep 17 00:00:00 2001 From: evast Date: Mon, 10 Aug 2015 14:27:39 +0200 Subject: [PATCH 1/8] Update README.md Added image caption --- README.md | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 315af60..ee004d5 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,7 @@ This TranSMART-XNAT-Importer plugin can import clinical image-derived data from XNAT and store them in TranSMART. -![alt tag](https://raw.github.com/evast/transmart-xnat-importer-plugin/master/docs/navigator.png) +![alt tag](https://raw.github.com/evast/transmart-xnat-importer-plugin/master/docs/navigator.png) +XNAT Data hierarchy shown in TranSMART ontology. TranSMART (http://transmartfoundation.org) is a data integration and browsing platform for central statistical analysis in translational research. @@ -8,4 +9,4 @@ XNAT (www.xnat.org) is a framework to store, share and manage medical imaging da To correlate the image-derived results with other medical data, such as demographic or genetic data, it would be useful to import the XNAT results in TranSMART. To this end, we developed the TranSMART-XNAT-Importer plugin (hereafter called plugin). To configure which XNAT image-derived data is imported in TranSMART, an administrator can create a coupling configuration in the online administration panel and start the import process. The plugin uses the default ETL Importer for clinical data to import the XNAT results in TranSMART. -Full background of the plugin, installation instructions and a user-guide to import data, can be found in documention.docx in the directory docs. \ No newline at end of file +Full background of the plugin, installation instructions and a user-guide to import data, can be found in documention.docx in the directory docs. From c6feda1d933d64ffd331c3a471f39aea52ac8830 Mon Sep 17 00:00:00 2001 From: evast Date: Mon, 10 Aug 2015 14:29:27 +0200 Subject: [PATCH 2/8] Update README.md Small textual change. --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index ee004d5..f66fc1d 100644 --- a/README.md +++ b/README.md @@ -7,6 +7,6 @@ TranSMART (http://transmartfoundation.org) is a data integration and browsing p XNAT (www.xnat.org) is a framework to store, share and manage medical imaging data. This imaging archive can be connected to a computing cluster for further image analyses. After analyses of the images, the analysis results (e.g. grey matter volumes) can be stored back in XNAT. -To correlate the image-derived results with other medical data, such as demographic or genetic data, it would be useful to import the XNAT results in TranSMART. To this end, we developed the TranSMART-XNAT-Importer plugin (hereafter called plugin). To configure which XNAT image-derived data is imported in TranSMART, an administrator can create a coupling configuration in the online administration panel and start the import process. The plugin uses the default ETL Importer for clinical data to import the XNAT results in TranSMART. +To correlate the image-derived results with other medical data, such as demographic or genetic data, it would be useful to import the XNAT results in TranSMART. To this end, we developed the TranSMART-XNAT-Importer plugin. To configure which XNAT image-derived data is imported in TranSMART, an administrator can create a coupling configuration in the online administration panel and start the import process. The plugin uses the default ETL Importer for clinical data to import the XNAT results in TranSMART. Full background of the plugin, installation instructions and a user-guide to import data, can be found in documention.docx in the directory docs. From b3bfb1f6d9693069b3d6dd83bdf86ef4c7f9ba97 Mon Sep 17 00:00:00 2001 From: evast Date: Mon, 10 Aug 2015 14:47:51 +0200 Subject: [PATCH 3/8] Update README.md Added headers --- README.md | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/README.md b/README.md index f66fc1d..bd13c2d 100644 --- a/README.md +++ b/README.md @@ -3,10 +3,16 @@ This TranSMART-XNAT-Importer plugin can import clinical image-derived data from ![alt tag](https://raw.github.com/evast/transmart-xnat-importer-plugin/master/docs/navigator.png) XNAT Data hierarchy shown in TranSMART ontology. +Background +---------- + TranSMART (http://transmartfoundation.org) is a data integration and browsing platform for central statistical analysis in translational research. XNAT (www.xnat.org) is a framework to store, share and manage medical imaging data. This imaging archive can be connected to a computing cluster for further image analyses. After analyses of the images, the analysis results (e.g. grey matter volumes) can be stored back in XNAT. To correlate the image-derived results with other medical data, such as demographic or genetic data, it would be useful to import the XNAT results in TranSMART. To this end, we developed the TranSMART-XNAT-Importer plugin. To configure which XNAT image-derived data is imported in TranSMART, an administrator can create a coupling configuration in the online administration panel and start the import process. The plugin uses the default ETL Importer for clinical data to import the XNAT results in TranSMART. +Installation +------------ + Full background of the plugin, installation instructions and a user-guide to import data, can be found in documention.docx in the directory docs. From 1d05a2b4ee35a570f1be5ba0fe53d9986260e4cd Mon Sep 17 00:00:00 2001 From: evast Date: Mon, 10 Aug 2015 14:50:09 +0200 Subject: [PATCH 4/8] Update README.md Changed header to more concrete title --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index bd13c2d..1577aab 100644 --- a/README.md +++ b/README.md @@ -3,7 +3,7 @@ This TranSMART-XNAT-Importer plugin can import clinical image-derived data from ![alt tag](https://raw.github.com/evast/transmart-xnat-importer-plugin/master/docs/navigator.png) XNAT Data hierarchy shown in TranSMART ontology. -Background +TranSMART-XNAT Coupling ---------- TranSMART (http://transmartfoundation.org) is a data integration and browsing platform for central statistical analysis in translational research. From 4347489f0f12162230c1a0ff548e3fdccc94807d Mon Sep 17 00:00:00 2001 From: evast Date: Mon, 10 Aug 2015 14:58:22 +0200 Subject: [PATCH 5/8] Update README.md Changed last paragraph --- README.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 1577aab..8dffcc2 100644 --- a/README.md +++ b/README.md @@ -12,7 +12,7 @@ XNAT (www.xnat.org) is a framework to store, share and manage medical imaging da To correlate the image-derived results with other medical data, such as demographic or genetic data, it would be useful to import the XNAT results in TranSMART. To this end, we developed the TranSMART-XNAT-Importer plugin. To configure which XNAT image-derived data is imported in TranSMART, an administrator can create a coupling configuration in the online administration panel and start the import process. The plugin uses the default ETL Importer for clinical data to import the XNAT results in TranSMART. -Installation ------------- +Documentation and Installation +------------------------------ -Full background of the plugin, installation instructions and a user-guide to import data, can be found in documention.docx in the directory docs. +Full background of the plugin and installation instructions, can be found in documention.docx in the GitHub directory docs. A user-guide to import data with step-by-step instructions and screenshot can be found in the same document From 100a43679f250a73b21abb5e514f66e137f22448 Mon Sep 17 00:00:00 2001 From: evast Date: Mon, 10 Aug 2015 15:09:19 +0200 Subject: [PATCH 6/8] Update README.md Textual changes installation paragraph and added link to documentation --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 8dffcc2..5439bcd 100644 --- a/README.md +++ b/README.md @@ -15,4 +15,4 @@ To correlate the image-derived results with other medical data, such as demograp Documentation and Installation ------------------------------ -Full background of the plugin and installation instructions, can be found in documention.docx in the GitHub directory docs. A user-guide to import data with step-by-step instructions and screenshot can be found in the same document +More information about the plugin and installation instructions, can be found in [documention.docx](https://github.com/evast/transmart-xnat-importer-plugin/blob/master/docs/documentation.docx?raw=true) in the GitHub directory docs. A user-guide to import data with step-by-step instructions and screenshots can be found in the same document. From d5a4c4c9d5cf888e44cb6ab96155d4bf348bac07 Mon Sep 17 00:00:00 2001 From: evast Date: Mon, 10 Aug 2015 15:09:47 +0200 Subject: [PATCH 7/8] Update README.md Textual change --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 5439bcd..c6fa36f 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,4 @@ -This TranSMART-XNAT-Importer plugin can import clinical image-derived data from XNAT and store them in TranSMART. +The TranSMART-XNAT-Importer plugin can import clinical image-derived data from XNAT and store them in TranSMART. ![alt tag](https://raw.github.com/evast/transmart-xnat-importer-plugin/master/docs/navigator.png) XNAT Data hierarchy shown in TranSMART ontology. From 8ddd337ab97a360eb1c7e09303fd44f3fb2030a6 Mon Sep 17 00:00:00 2001 From: evast Date: Mon, 10 Aug 2015 15:11:21 +0200 Subject: [PATCH 8/8] Update README.md Removed Github word --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index c6fa36f..3372cd4 100644 --- a/README.md +++ b/README.md @@ -15,4 +15,4 @@ To correlate the image-derived results with other medical data, such as demograp Documentation and Installation ------------------------------ -More information about the plugin and installation instructions, can be found in [documention.docx](https://github.com/evast/transmart-xnat-importer-plugin/blob/master/docs/documentation.docx?raw=true) in the GitHub directory docs. A user-guide to import data with step-by-step instructions and screenshots can be found in the same document. +More information about the plugin and installation instructions, can be found in [documention.docx](https://github.com/evast/transmart-xnat-importer-plugin/blob/master/docs/documentation.docx?raw=true) in the directory docs. A user-guide to import data with step-by-step instructions and screenshots can be found in the same document.