From 9a4252ef72a1a88a32bd3d904a90340b7b44dbe3 Mon Sep 17 00:00:00 2001
From: Eric Weitz <eric.m.weitz@gmail.com>
Date: Wed, 5 Jan 2022 06:13:41 -0500
Subject: [PATCH] Reduce padding and # labels, fix search bug in Gene Hints

---
 src/js/annotations/labels.js | 4 ++--
 src/js/kit/related-genes.js  | 4 +++-
 2 files changed, 5 insertions(+), 3 deletions(-)

diff --git a/src/js/annotations/labels.js b/src/js/annotations/labels.js
index 55c2a442..33919918 100644
--- a/src/js/annotations/labels.js
+++ b/src/js/annotations/labels.js
@@ -225,7 +225,7 @@ function fillAnnotLabels(sortedAnnots=[]) {
     sortedAnnots = ideo.flattenAnnots();
   }
 
-  const m = 5; // padding
+  const m = 3; // padding
 
   sortedAnnots.forEach((annot, i) => {
     const layout = getAnnotLabelLayout(annot, ideo);
@@ -265,7 +265,7 @@ function fillAnnotLabels(sortedAnnots=[]) {
   });
 
 
-  spacedAnnots = applyRankCutoff(spacedAnnots, 20, ideo);
+  spacedAnnots = applyRankCutoff(spacedAnnots, 10, ideo);
 
   // Ensure highest-ranked annots are ordered last in SVG,
   // to ensure the are written before lower-ranked annots
diff --git a/src/js/kit/related-genes.js b/src/js/kit/related-genes.js
index e9e4fd87..561dcd68 100644
--- a/src/js/kit/related-genes.js
+++ b/src/js/kit/related-genes.js
@@ -430,7 +430,7 @@ async function fetchParalogs(annot, ideo) {
   // Omit genes named like "AC113554.1", which is an "accession.version".
   // Such accVers are raw and poorly suited here.
   annots = annots.filter(annot => {
-    const isAccVer = annot.name.match(/AC[0-9.]+$/);
+    const isAccVer = annot.name.match(/^AC[0-9.]+$/);
     return !isAccVer;
   });
 
@@ -1047,6 +1047,8 @@ function _initGeneHints(config, annotsInList) {
 
   initAnalyzeRelatedGenes(ideogram);
 
+  initGeneCache(ideogram.config.organism, ideogram);
+
   return ideogram;
 }