UPPMAX specific scripts and resources for Cluster Flow
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Cluster Flow: UPPMAX Scripts

UPPMAX specific scripts and resources for Cluster Flow.

See the main Cluster Flow repository here: https://github.com/ewels/clusterflow

You can find out more information about UPPMAX here: http://www.uppmax.uu.se

UPPMAX Genomes

This script adds central UPPMAX reference genomes to ~/.clusterflow/genomes.config (central and iGenomes).

You can run it as follows:

cf-uppmax --add_genomes

This will launch an interactive wizard to help you choose which genomes you would like to use, before setting up your genomes config file for you.


Cluster Flow is released with a GPL v3 licence. Cluster Flow is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. For more information, see the licence that comes bundled with Cluster Flow.


These scripts and Cluster Flow were written by Phil Ewels, at the Science for Life Laboratory in Stockholm, Sweden.