ExpressionAnalysis/ea-utils

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No output when running fastq-mcf
#59 by youngchan919 was closed May 8, 2017

2
It is not Multi-threading
#51 by NitinMandloi was closed Dec 15, 2016

1
Please use release tags
#50 by tillea was closed May 8, 2017

1
Illumina PF filtering not working
#45 by mitros was closed May 8, 2017

1
error message: "fastq-mcf has stopped working" auto-migrated Priority-Medium Type-Defect
#36 by GoogleCodeExporter was closed Aug 3, 2015

4
fastq-mcf not working correctly on ubuntu 14.04 auto-migrated Priority-Medium Type-Defect
#35 by GoogleCodeExporter was closed Aug 3, 2015

9
Wrong number (/ counter / calculation) in summary statistics of fastq-mcf auto-migrated Priority-Medium Type-Defect
#34 by GoogleCodeExporter was closed Aug 3, 2015

2
fastq-multx supporting sequence in header auto-migrated Priority-High Type-Enhancement
#31 by GoogleCodeExporter was closed Aug 3, 2015

1
fastq-multx when barcode is in header between # and / symbols? auto-migrated Priority-Medium Type-Defect
#30 by GoogleCodeExporter was closed Aug 3, 2015

7
Limit on the number of files it can handle auto-migrated Priority-Medium Type-Defect
#29 by GoogleCodeExporter was closed Aug 3, 2015

1
The gtf2bed script generate bed with wrong chrStart and chrEnd coordinates for plus strand auto-migrated Priority-Medium Type-Defect
#28 by GoogleCodeExporter was closed Aug 3, 2015

4
Incorrect total reads when using FIFO auto-migrated Priority-Medium Type-Defect
#26 by GoogleCodeExporter was closed Aug 3, 2015

2
fastq-mcf: Allow merging multiple FASTQ input files to one (or two in case of paired-end) cleaned fastq file auto-migrated Priority-Medium Type-Defect
#24 by GoogleCodeExporter was closed Aug 3, 2015

4
Add "make clean" target to Makefile auto-migrated Priority-Medium Type-Defect
#23 by GoogleCodeExporter was closed Aug 3, 2015

3
--max-ns 0 does not seem to work, still getting reads with Ns auto-migrated Priority-Medium Type-Defect
#22 by GoogleCodeExporter was closed Aug 3, 2015

6
sam-stats fails to properly deduce unmapped reads and snp (ins/del) rate auto-migrated Priority-Medium Type-Defect
#21 by GoogleCodeExporter was closed Aug 3, 2015

6
sam-stats is not installed auto-migrated Priority-Medium Type-Defect
#20 by GoogleCodeExporter was closed Aug 3, 2015

1
ea-utils621-win fastq-stats and fastq-mcf not working auto-migrated Priority-Medium Type-Defect
#19 by GoogleCodeExporter was closed Aug 3, 2015

3
make: *** [fastq-mcf] Error 1 auto-migrated Priority-Medium Type-Other
#18 by GoogleCodeExporter was closed Aug 3, 2015

13
make install failing because it can't find gsl-randist.h auto-migrated Priority-Medium Type-Defect
#17 by GoogleCodeExporter was closed Aug 3, 2015

4
issue with gtf2bed auto-migrated Priority-Medium Type-Defect
#16 by GoogleCodeExporter was closed Aug 3, 2015

2
The N-percent maximum difference auto-migrated Priority-Medium Type-Other
#15 by GoogleCodeExporter was closed Aug 3, 2015

2
Inconsistant fastq-mcf between servers auto-migrated Priority-Medium Type-Defect
#14 by GoogleCodeExporter was closed Aug 3, 2015

8
Has anyone been able to compile EA utils on Moutain Lion? auto-migrated Priority-Medium Type-Other
#13 by GoogleCodeExporter was closed Aug 3, 2015

9
fastq-mcf does not process all fasta entries auto-migrated Priority-Medium Type-Enhancement
#12 by GoogleCodeExporter was closed Aug 3, 2015

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