From efc96e0747889fcab718ede2da1f8b509a3b3748 Mon Sep 17 00:00:00 2001 From: Fabio Zanini Date: Sun, 31 May 2020 18:27:38 +1000 Subject: [PATCH] Doc improvements --- docs/tutorial.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/tutorial.rst b/docs/tutorial.rst index 4650e7e..672dca4 100644 --- a/docs/tutorial.rst +++ b/docs/tutorial.rst @@ -82,7 +82,7 @@ cells, genes as columns): `CellType` that describes for each cell its cell type. - If you plan to use the `Averages` class, the `AnnData` must have an `obs` column called `NumberOfCells` that is used to weight each cell type in the PCA. A value of 20 for all cell types is typical. -Create an atlas from an existing dataset +Alternative: custom atlas ---------------------------------------- `northstar` provides a function to subsample an existing annotated dataset to small cell numbers within each cell type, ready for further use with the `Subsample` class. You data must be in an `AnnData` object. You can call it by: