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patrick-s-h-lewis committed Jul 22, 2021
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# Biomedical and Clinical Language Models

This repository contains code and modeks to support the research paper [Pretrained Language Models for Biomedical and Clinical Tasks: Understanding and Extending the State-of-the-Art](https://www.aclweb.org/anthology/2020.clinicalnlp-1.17/)
This repository contains code and models to support the research paper [Pretrained Language Models for Biomedical and Clinical Tasks: Understanding and Extending the State-of-the-Art](https://www.aclweb.org/anthology/2020.clinicalnlp-1.17/)

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* The BLUE Benchmark, an external dependency cloned and used for some preprocessing tasks, is licenced according to the [licence](https://github.com/ncbi-nlp/BLUE_Benchmark/blob/master/LICENSE.txt) it is distributed with.
* `preprocess_i2b2_2010_ner.py`, `preprocess_i2b2_2012_ner.py`, `preprocess_i2b2_2014_ner.py` are adapted from preprocessing jupyter notebooks in [ClinicalBERT](https://github.com/EmilyAlsentzer/clinicalBERT), and are licensed according to the [MIT License](https://opensource.org/licenses/MIT).
* `run_classification.py` and `utils_classification.py` are licensed according the [Apache 2.0 License](http://www.apache.org/licenses/LICENSE-2.0)
* `run_sequence_labelling.py` and `utils_sequence_labelling.py` are licensed according the [Apache 2.0 License](http://www.apache.org/licenses/LICENSE-2.0)
* `run_sequence_labelling.py` and `utils_sequence_labelling.py` are licensed according the [Apache 2.0 License](http://www.apache.org/licenses/LICENSE-2.0)

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